Conservation of cofitness between CSW01_06015 and CSW01_00065 in Vibrio cholerae E7946 ATCC 55056

42 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_06015 NAD-dependent malic enzyme 1.0 CSW01_00065 DNA replication and repair protein RecF 0.46 18
Shewanella oneidensis MR-1 0.76 SO3855 sfcA malate oxidoreductase (NCBI ptt file) 0.45 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.75 Sama_2621 malate dehydrogenase (RefSeq) 0.44 Sama_0015 recF recombination protein F (RefSeq) low > 62
Shewanella sp. ANA-3 0.75 Shewana3_0750 malate dehydrogenase (RefSeq) 0.45 Shewana3_0011 recF recombination protein F (RefSeq) low > 73
Shewanella loihica PV-4 0.74 Shew_2962 malate dehydrogenase (RefSeq) 0.46 Shew_0003 DNA replication and repair protein RecF (RefSeq) low > 60
Serratia liquefaciens MT49 0.72 IAI46_07935 NAD-dependent malic enzyme 0.56 IAI46_00015 DNA replication/repair protein RecF low > 87
Dickeya dianthicola ME23 0.72 DZA65_RS08935 NAD-dependent malic enzyme 0.55 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS08645 NAD-dependent malic enzyme 0.55 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Dickeya dadantii 3937 0.72 DDA3937_RS08480 NAD-dependent malic enzyme 0.55 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Rahnella sp. WP5 0.71 EX31_RS18665 NAD-dependent malic enzyme 0.55 EX31_RS05975 DNA replication/repair protein RecF low > 89
Pectobacterium carotovorum WPP14 0.71 HER17_RS13490 NAD-dependent malic enzyme 0.55 HER17_RS00015 DNA replication/repair protein RecF low > 75
Pantoea sp. MT58 0.71 IAI47_06755 NAD-dependent malic enzyme 0.56 IAI47_00015 DNA replication/repair protein RecF low > 76
Enterobacter asburiae PDN3 0.71 EX28DRAFT_1103 Malic enzyme 0.54 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Enterobacter sp. TBS_079 0.70 MPMX20_02369 NAD-dependent malic enzyme 0.54 MPMX20_00003 DNA replication and repair protein RecF low > 85
Pantoea agglomerans CFBP13505 P0401 0.70 PagCFBP13516_RS07125 NAD-dependent malic enzyme 0.56 PagCFBP13516_RS00015 recF DNA replication/repair protein RecF low > 80
Klebsiella pneumoniae MRSN742743 0.70 GJGHJB_02336 maeA NAD-dependent malic enzyme 0.54 GJGHJB_00004 recF DNA replication/repair protein RecF low > 83
Klebsiella pneumoniae MKP103 0.70 KDGMDA_22715 NAD-dependent malic enzyme 0.54 KDGMDA_08670 DNA replication/repair protein RecF low > 94
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.70 GFF2556 NAD-dependent malic enzyme (EC 1.1.1.38) 0.54 GFF1756 DNA recombination and repair protein RecF low > 78
Klebsiella michiganensis M5al 0.69 BWI76_RS13830 NAD-dependent malic enzyme 0.54 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Erwinia amylovora T8 0.69 OLJFJH_11870 NAD-dependent malic enzyme 0.57 OLJFJH_05150 DNA replication/repair protein RecF low > 58
Escherichia coli HS(pFamp)R (ATCC 700891) 0.69 OHPLBJKB_02238 NAD-dependent malic enzyme 0.55 OHPLBJKB_00003 DNA replication and repair protein RecF low > 74
Erwinia tracheiphila HP pepo 2.2 0.69 IJEDHG_18660 maeA NAD-dependent malic enzyme 0.56 IJEDHG_09800 recF DNA replication/repair protein RecF low > 61
Escherichia coli BW25113 0.69 b1479 sfcA NAD-linked malate dehydrogenase (malic enzyme) (VIMSS) 0.55 b3700 recF recombination protein F (NCBI) low > 76
Escherichia coli ECOR27 0.69 NOLOHH_19035 maeA malate dehydrogenase 0.55 NOLOHH_07165 recF DNA replication/repair protein RecF low > 75
Escherichia coli BL21 0.69 ECD_01437 malate dehydrogenase, decarboxylating, NAD-requiring; malic enzyme 0.55 ECD_03583 gap repair protein — —
Escherichia coli ECRC62 0.69 BNILDI_17520 maeA malate dehydrogenase 0.55 BNILDI_04365 recF DNA replication/repair protein RecF low > 75
Escherichia fergusonii Becca 0.69 EFB2_02512 NAD-dependent malic enzyme 0.55 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli ECOR38 0.69 HEPCGN_26435 maeA malate dehydrogenase 0.55 HEPCGN_13720 recF DNA replication/repair protein RecF low > 88
Erwinia tracheiphila SCR3 0.69 LU632_RS08550 NAD-dependent malic enzyme 0.55 LU632_RS00015 recF DNA replication/repair protein RecF low > 73
Escherichia coli Nissle 1917 0.69 ECOLIN_RS08525 malate dehydrogenase 0.55 ECOLIN_RS21310 DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.69 MCAODC_16580 maeA malate dehydrogenase 0.55 MCAODC_05535 recF DNA replication/repair protein RecF low > 87
Escherichia coli ECRC100 0.69 OKFHMN_01360 maeA malate dehydrogenase 0.55 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC98 0.69 JDDGAC_03850 maeA malate dehydrogenase 0.55 JDDGAC_18645 recF DNA replication/repair protein RecF low > 87
Escherichia coli ECRC102 0.69 NIAGMN_25490 maeA malate dehydrogenase 0.55 NIAGMN_12780 recF DNA replication/repair protein RecF low > 80
Escherichia coli ECRC99 0.69 KEDOAH_27080 maeA malate dehydrogenase 0.55 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Acinetobacter baumannii LAC-4 0.67 RR41_RS18215 NAD-dependent malic enzyme 0.29 RR41_RS00015 DNA replication/repair protein RecF low > 55
Acinetobacter radioresistens SK82 0.67 MPMX26_00080 NAD-dependent malic enzyme 0.30 MPMX26_00003 DNA replication and repair protein RecF low > 36
Pseudomonas syringae pv. syringae B728a 0.65 Psyr_1561 NAD-dependent malic enzyme 0.38 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.65 Psyr_1561 NAD-dependent malic enzyme 0.38 Psyr_0003 DNA replication and repair protein RecF low > 86
Alteromonas macleodii MIT1002 0.64 MIT1002_00455 NAD-dependent malic enzyme 0.35 MIT1002_00003 DNA replication and repair protein RecF low > 70
Pseudomonas aeruginosa PA14 0.63 IKLFDK_17815 NAD-dependent malic enzyme 0.38 IKLFDK_25545 DNA replication/repair protein RecF low > 98
Pseudomonas aeruginosa PUPa3 0.63 NPBIFN_01518 maeA NAD-dependent malic enzyme 0.38 NPBIFN_00003 recF DNA replication/repair protein RecF low > 101
Pseudomonas aeruginosa MRSN321 0.63 PFGADD_01479 maeA NAD-dependent malic enzyme 0.38 PFGADD_00003 recF DNA replication/repair protein RecF low > 99

Not shown: 4 genomes with orthologs for CSW01_06015 only; 23 genomes with orthologs for CSW01_00065 only