| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_0521 | | PEP-CTERM-box response regulator transcription factor | 1.0 | B158DRAFT_2210 | | Periplasmic serine proteases (ClpP class) | 0.82 | 3 |
| Alteromonas macleodii MIT1002 | 0.57 | MIT1002_03048 | | Transcriptional regulatory protein ZraR | 0.42 | MIT1002_01969 | | putative protease SohB | low | > 70 |
| Marinobacter adhaerens HP15 | 0.55 | HP15_1891 | | two component, sigma54 specific, transcriptional regulator, Fis family | 0.40 | HP15_1798 | | sohB protein, peptidase U7 family | low | > 73 |
| Escherichia coli BW25113 | 0.35 | b2220 | atoC | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) | 0.42 | b1272 | sohB | predicted inner membrane peptidase (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.35 | ECD_02147 | | fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein | 0.42 | ECD_01248 | | inner membrane protein, S49 peptidase family protein | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.35 | OHPLBJKB_01490 | | Regulatory protein AtoC | 0.42 | OHPLBJKB_02412 | | putative protease SohB | low | > 73 |
| Escherichia coli ECOR38 | 0.35 | HEPCGN_22430 | atoC | acetoacetate metabolism transcriptional regulator AtoC | 0.42 | HEPCGN_25585 | sohB | protease SohB | low | > 87 |
| Escherichia coli Nissle 1917 | 0.35 | ECOLIN_RS12965 | | acetoacetate metabolism transcriptional regulator AtoC | 0.42 | ECOLIN_RS07655 | | protease SohB | — | — |
| Escherichia fergusonii Becca | 0.35 | EFB2_01635 | | Regulatory protein AtoC | 0.41 | EFB2_02655 | | putative protease SohB | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.33 | Psyr_0263 | | Two-component response regulator AlgB | 0.37 | Psyr_2460 | | inner membrane peptidase, Serine peptidase, MEROPS family S49 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.33 | Psyr_0263 | | Two-component response regulator AlgB | 0.37 | Psyr_2460 | | inner membrane peptidase, Serine peptidase, MEROPS family S49 | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.33 | Psest_0192 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.38 | Psest_2085 | | Periplasmic serine proteases (ClpP class) | low | > 67 |
| Pseudomonas putida KT2440 | 0.33 | PP_0133 | | Alginate biosynthesis transcriptional regulatory protein AlgB | 0.40 | PP_3922 | | putative inner membrane peptidase | low | > 96 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.32 | GFF2455 | | Putative sensory histidine kinase YfhA | 0.42 | GFF2716 | | Possible protease sohB (EC 3.4.21.-) | low | > 78 |
| Escherichia coli ECRC62 | 0.32 | BNILDI_06055 | zraR | sigma-54-dependent response regulator transcription factor ZraR | 0.42 | BNILDI_18430 | sohB | protease SohB | low | > 75 |
| Escherichia coli ECRC99 | 0.32 | KEDOAH_14840 | zraR | sigma-54-dependent response regulator transcription factor ZraR | 0.42 | KEDOAH_26150 | sohB | protease SohB | — | — |
| Escherichia coli ECRC102 | 0.32 | NIAGMN_11070 | zraR | sigma-54-dependent response regulator transcription factor ZraR | 0.42 | NIAGMN_26785 | sohB | protease SohB | — | — |
| Escherichia coli ECRC101 | 0.32 | MCAODC_03820 | zraR | sigma-54-dependent response regulator transcription factor ZraR | 0.42 | MCAODC_15650 | sohB | protease SohB | low | > 87 |
| Dickeya dadantii 3937 | 0.32 | DDA3937_RS20820 | | two-component system response regulator VfmH | 0.46 | DDA3937_RS10515 | | protease SohB | low | > 74 |
| Escherichia coli ECOR27 | 0.32 | NOLOHH_05465 | zraR | sigma-54-dependent response regulator transcription factor ZraR | 0.42 | NOLOHH_20280 | sohB | protease SohB | low | > 75 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS21250 | | two-component system response regulator GlrR | 0.41 | BWI76_RS11915 | | protease SohB | low | > 92 |
| Dickeya dianthicola ME23 | 0.32 | DZA65_RS00425 | | sigma-54-dependent Fis family transcriptional regulator | 0.45 | DZA65_RS10995 | | protease SohB | low | > 75 |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS00425 | | two-component system response regulator VfmH | 0.45 | HGI48_RS10515 | | protease SohB | low | > 71 |
| Enterobacter sp. TBS_079 | 0.32 | MPMX20_03423 | | Transcriptional regulatory protein QseF | 0.42 | MPMX20_02504 | | putative protease SohB | low | > 85 |
| Escherichia coli ECRC98 | 0.32 | JDDGAC_16945 | zraR | sigma-54-dependent response regulator transcription factor ZraR | 0.42 | JDDGAC_05160 | sohB | protease SohB | low | > 86 |
| Escherichia coli ECRC100 | 0.32 | OKFHMN_13320 | zraR | sigma-54-dependent response regulator transcription factor ZraR | 0.42 | OKFHMN_02615 | sohB | protease SohB | — | — |
| Shewanella loihica PV-4 | 0.31 | Shew_2341 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | 0.42 | Shew_2407 | | putative periplasmic protease (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.31 | CSW01_09635 | | sigma-54-dependent Fis family transcriptional regulator | 0.43 | CSW01_05395 | | protease SohB | low | > 62 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | 0.41 | EX28DRAFT_0943 | | Periplasmic serine proteases (ClpP class) | low | > 76 |
| Rahnella sp. WP5 | 0.31 | EX31_RS20615 | | two-component system response regulator GlrR | 0.46 | EX31_RS09905 | | protease SohB | low | > 89 |
| Shewanella amazonensis SB2B | 0.31 | Sama_2213 | | response regulator receiver protein (RefSeq) | 0.43 | Sama_2119 | | putative periplasmic protease (RefSeq) | low | > 62 |
| Pseudomonas sp. S08-1 | 0.31 | OH686_12145 | | Alginate biosynthesis two-component system response regulator AlgB | 0.37 | OH686_03495 | | Peptidase, U7 family | low | > 80 |
| Serratia liquefaciens MT49 | 0.31 | IAI46_19460 | | two-component system response regulator GlrR | 0.45 | IAI46_13980 | | protease SohB | low | > 86 |
| Pantoea sp. MT58 | 0.30 | IAI47_04945 | | two-component system response regulator GlrR | 0.43 | IAI47_09225 | | protease SohB | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS05925 | | two-component system response regulator GlrR | 0.45 | HER17_RS10885 | | protease SohB | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.30 | LU632_RS17930 | glrR | two-component system response regulator GlrR | 0.45 | LU632_RS12720 | sohB | protease SohB | low | > 74 |
| Shewanella sp. ANA-3 | 0.29 | Shewana3_2016 | | two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) | 0.43 | Shewana3_1530 | | putative periplasmic protease (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.29 | SO3230 | flrC | flagellar regulatory protein C (NCBI ptt file) | 0.42 | SO_2933 | | putative periplasmic protease (RefSeq) | low | > 76 |
Not shown: 36 genomes with orthologs for B158DRAFT_0521 only; 9 genomes with orthologs for B158DRAFT_2210 only