| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu0085 | | tRNA pseudouridine 55 synthase | 1.0 | Atu2555 | | L-lysine 2,3-aminomutase | 0.25 | 16 |
| Rhizobium sp. OAE497 | 0.83 | ABIE40_RS00345 | | tRNA pseudouridine(55) synthase TruB | 0.69 | ABIE40_RS18550 | | lysine-2,3-aminomutase-like protein | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.80 | SMc00321 | | tRNA pseudouridine synthase B | 0.67 | SMc00355 | | hypothetical protein | low | > 103 |
| Rhodopseudomonas palustris CGA009 | 0.53 | TX73_002255 | | tRNA pseudouridine(55) synthase TruB | 0.57 | TX73_012995 | | lysine-2,3-aminomutase-like protein | — | — |
| Bosea sp. OAE506 | 0.52 | ABIE41_RS04565 | | tRNA pseudouridine(55) synthase TruB | 0.53 | ABIE41_RS00075 | | lysine-2,3-aminomutase-like protein | 0.44 | 15 |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_02524 | | tRNA pseudouridine synthase B | 0.53 | MPMX19_00061 | | L-lysine 2,3-aminomutase | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.44 | AMB_RS20810 | | tRNA pseudouridine(55) synthase TruB | 0.48 | AMB_RS06530 | | lysine-2,3-aminomutase-like protein | — | — |
| Caulobacter crescentus NA1000 | 0.43 | CCNA_00035 | | tRNA pseudouridine synthase B | 0.58 | CCNA_00753 | | lysine 2,3-aminomutase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.43 | CCNA_00035 | | tRNA pseudouridine synthase B | 0.58 | CCNA_00753 | | lysine 2,3-aminomutase | low | > 67 |
| Rhodospirillum rubrum S1H | 0.40 | Rru_A3783 | | tRNA pseudouridine synthase B (NCBI) | 0.47 | Rru_A0224 | | Protein of unknown function DUF160 (NCBI) | low | > 58 |
| Kangiella aquimarina DSM 16071 | 0.32 | B158DRAFT_0108 | | tRNA pseudouridine 55 synthase | 0.23 | B158DRAFT_0984 | | lysine-2,3-aminomutase-related protein | low | > 40 |
| Alteromonas macleodii MIT1002 | 0.31 | MIT1002_01773 | | tRNA pseudouridine synthase B | 0.24 | MIT1002_00681 | | L-lysine 2,3-aminomutase | low | > 70 |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS18200 | | tRNA pseudouridine(55) synthase TruB | 0.23 | HER17_RS02350 | | EF-P beta-lysylation protein EpmB | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.29 | CSW01_03400 | | tRNA pseudouridine(55) synthase TruB | 0.23 | CSW01_13450 | | EF-P beta-lysylation protein EpmB | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.29 | MPMX26_02778 | | tRNA pseudouridine synthase B | 0.26 | MPMX26_01066 | | L-lysine 2,3-aminomutase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.28 | Xcc-8004.2004.1 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.24 | Xcc-8004.2285.1 | | Lysyl-lysine 2,3-aminomutase | — | — |
| Pantoea sp. MT58 | 0.28 | IAI47_17015 | | tRNA pseudouridine(55) synthase TruB | 0.24 | IAI47_17295 | | EF-P beta-lysylation protein EpmB | — | — |
| Escherichia coli ECRC101 | 0.28 | MCAODC_08645 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | MCAODC_02905 | epmB | EF-P beta-lysylation protein EpmB | — | — |
| Dickeya dadantii 3937 | 0.28 | DDA3937_RS03080 | | tRNA pseudouridine(55) synthase TruB | 0.24 | DDA3937_RS19000 | | EF-P beta-lysylation protein EpmB | low | > 74 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.28 | OHPLBJKB_00534 | | tRNA pseudouridine synthase B | 0.25 | OHPLBJKB_03896 | | L-lysine 2,3-aminomutase | low | > 73 |
| Escherichia coli ECOR38 | 0.28 | HEPCGN_17000 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | HEPCGN_10620 | epmB | EF-P beta-lysylation protein EpmB | 0.93 | 43 |
| Escherichia coli BW25113 | 0.28 | b3166 | truB | tRNA pseudouridine synthase B (NCBI) | 0.25 | b4146 | yjeK | predicted lysine aminomutase (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.28 | OKFHMN_18125 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | OKFHMN_12395 | epmB | EF-P beta-lysylation protein EpmB | — | — |
| Escherichia coli Nissle 1917 | 0.28 | ECOLIN_RS18185 | | tRNA pseudouridine(55) synthase TruB | 0.25 | ECOLIN_RS24080 | | EF-P beta-lysylation protein EpmB | — | — |
| Escherichia coli ECRC102 | 0.28 | NIAGMN_15885 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | NIAGMN_10240 | epmB | EF-P beta-lysylation protein EpmB | — | — |
| Escherichia coli ECRC98 | 0.28 | JDDGAC_21750 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | JDDGAC_16030 | epmB | EF-P beta-lysylation protein EpmB | — | — |
| Escherichia coli ECRC99 | 0.28 | KEDOAH_10025 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | KEDOAH_15770 | epmB | EF-P beta-lysylation protein EpmB | — | — |
| Escherichia coli BL21 | 0.28 | ECD_03033 | | tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase | 0.25 | ECD_04016 | | EF-P-Lys34 lysylation protein; weak lysine 2,3-aminomutase | — | — |
| Escherichia fergusonii Becca | 0.27 | EFB2_00657 | | tRNA pseudouridine synthase B | 0.25 | EFB2_04389 | | L-lysine 2,3-aminomutase | low | > 86 |
| Lysobacter sp. OAE881 | 0.27 | ABIE51_RS08405 | | tRNA pseudouridine(55) synthase TruB | 0.24 | ABIE51_RS13505 | | EF-P beta-lysylation protein EpmB | — | — |
| Klebsiella michiganensis M5al | 0.27 | BWI76_RS25080 | | tRNA pseudouridine(55) synthase | 0.26 | BWI76_RS02410 | | EF-P beta-lysylation protein EpmB | 0.35 | 5 |
| Enterobacter asburiae PDN3 | 0.27 | EX28DRAFT_3217 | | tRNA pseudouridine(55) synthase | 0.25 | EX28DRAFT_3342 | | EF-P beta-lysylation protein EpmB | — | — |
| Erwinia tracheiphila SCR3 | 0.27 | LU632_RS21050 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | LU632_RS01880 | epmB | EF-P beta-lysylation protein EpmB | — | — |
| Escherichia coli ECOR27 | 0.27 | NOLOHH_09925 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | NOLOHH_04655 | epmB | EF-P beta-lysylation protein EpmB | — | — |
| Escherichia coli ECRC62 | 0.27 | BNILDI_01610 | truB | tRNA pseudouridine(55) synthase TruB | 0.25 | BNILDI_06835 | epmB | EF-P beta-lysylation protein EpmB | — | — |
| Enterobacter sp. TBS_079 | 0.27 | MPMX20_04071 | | tRNA pseudouridine synthase B | 0.25 | MPMX20_00425 | | L-lysine 2,3-aminomutase | — | — |
| Dickeya dianthicola 67-19 | 0.27 | HGI48_RS03250 | | tRNA pseudouridine(55) synthase TruB | 0.23 | HGI48_RS19090 | | EF-P beta-lysylation protein EpmB | 0.73 | 14 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.27 | GFF1500 | | tRNA pseudouridine synthase B (EC 4.2.1.70) | 0.24 | GFF2006 | | Lysyl-lysine 2,3-aminomutase | — | — |
| Serratia liquefaciens MT49 | 0.27 | IAI46_01945 | | tRNA pseudouridine(55) synthase TruB | 0.24 | IAI46_01505 | | EF-P beta-lysylation protein EpmB | — | — |
| Rahnella sp. WP5 | 0.27 | EX31_RS08530 | | tRNA pseudouridine(55) synthase TruB | 0.24 | EX31_RS08940 | | EF-P beta-lysylation protein EpmB | — | — |
| Dickeya dianthicola ME23 | 0.27 | DZA65_RS03245 | | tRNA pseudouridine(55) synthase TruB | 0.24 | DZA65_RS20210 | | EF-P beta-lysylation protein EpmB | — | — |
| Marinobacter adhaerens HP15 | 0.26 | HP15_3065 | | tRNA pseudouridine synthase B | 0.23 | HP15_2514 | | lysine 2,3-aminomutase YodO family protein | low | > 73 |
Not shown: 41 genomes with orthologs for Atu0085 only; 1 genomes with orthologs for Atu2555 only