Conservation of cofitness between AO353_08720 and AO353_17155 in Pseudomonas fluorescens FW300-N2E3

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E3 1.0 AO353_08720 glycine dehydrogenase 1.0 AO353_17155 RNA polymerase-associated protein RapA 0.32 1
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.97 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_904 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.97 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 87
Pseudomonas sp. S08-1 0.82 OH686_11165 glycine dehydrogenase 0.85 OH686_19955 RNA polymerase associated protein RapA low > 80
Pseudomonas stutzeri RCH2 0.82 Psest_0183 glycine dehydrogenase (decarboxylating) 0.85 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family low > 67
Pseudomonas putida KT2440 0.81 PP_5192 glycine dehydrogenase 0.90 PP_1145 RNA polymerase-associated protein RapA low > 96
Alteromonas macleodii MIT1002 0.63 MIT1002_02971 Glycine dehydrogenase [decarboxylating] 0.41 MIT1002_00659 RNA polymerase-associated protein RapA low > 70
Shewanella amazonensis SB2B 0.63 Sama_2719 glycine dehydrogenase (RefSeq) 0.46 Sama_3131 ATP-dependent helicase HepA (RefSeq) low > 62
Escherichia coli BW25113 0.63 b2903 gcvP glycine dehydrogenase (NCBI) 0.49 b0059 hepA ATP-dependent helicase HepA (NCBI) 0.47 8
Escherichia coli ECRC62 0.63 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase 0.49 BNILDI_08460 rapA RNA polymerase-associated protein RapA low > 75
Shewanella loihica PV-4 0.63 Shew_3062 glycine dehydrogenase (RefSeq) 0.47 Shew_0457 ATP-dependent helicase HepA (RefSeq) low > 60
Escherichia coli Nissle 1917 0.63 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase 0.49 ECOLIN_RS00315 RNA polymerase-associated protein RapA low > 55
Escherichia coli BL21 0.63 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex 0.49 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) 0.49 OHPLBJKB_03599 RNA polymerase-associated protein RapA low > 73
Escherichia coli ECOR27 0.63 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase 0.49 NOLOHH_03145 rapA RNA polymerase-associated protein RapA low > 75
Escherichia fergusonii Becca 0.63 EFB2_00999 Glycine dehydrogenase (decarboxylating) 0.50 EFB2_03986 RNA polymerase-associated protein RapA low > 86
Escherichia coli ECOR38 0.63 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase 0.49 HEPCGN_08790 rapA RNA polymerase-associated protein RapA low > 87
Escherichia coli ECRC98 0.62 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase 0.49 JDDGAC_14395 rapA RNA polymerase-associated protein RapA 0.72 25
Escherichia coli ECRC102 0.62 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase 0.49 NIAGMN_08650 rapA RNA polymerase-associated protein RapA — —
Escherichia coli ECRC100 0.62 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase 0.49 OKFHMN_10800 rapA RNA polymerase-associated protein RapA low > 80
Escherichia coli ECRC101 0.62 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase 0.49 MCAODC_01315 rapA RNA polymerase-associated protein RapA low > 87
Escherichia coli ECRC99 0.62 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase 0.49 KEDOAH_17355 rapA RNA polymerase-associated protein RapA — —
Shewanella oneidensis MR-1 0.62 SO0781 gcvP glycine cleavage system P protein (NCBI ptt file) 0.48 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.62 Shewana3_3499 glycine dehydrogenase (RefSeq) 0.48 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) low > 73
Enterobacter asburiae PDN3 0.62 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) 0.49 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family low > 76
Enterobacter sp. TBS_079 0.62 MPMX20_03762 Glycine dehydrogenase (decarboxylating) 0.49 MPMX20_00753 RNA polymerase-associated protein RapA low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.49 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) low > 78
Klebsiella michiganensis M5al 0.61 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.49 BWI76_RS04570 RNA polymerase-associated protein RapA low > 92
Pantoea sp. MT58 0.61 IAI47_03775 aminomethyl-transferring glycine dehydrogenase 0.48 IAI47_16055 RNA polymerase-associated protein RapA low > 76
Dickeya dianthicola 67-19 0.61 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase 0.48 HGI48_RS18170 RNA polymerase-associated protein RapA low > 71
Dickeya dadantii 3937 0.61 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase 0.48 DDA3937_RS18235 RNA polymerase-associated protein RapA low > 74
Erwinia tracheiphila SCR3 0.61 LU632_RS05915 gcvP aminomethyl-transferring glycine dehydrogenase 0.48 LU632_RS02805 rapA RNA polymerase-associated protein RapA low > 74
Dickeya dianthicola ME23 0.61 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase 0.48 DZA65_RS19310 RNA polymerase-associated protein RapA low > 75
Pectobacterium carotovorum WPP14 0.61 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase 0.49 HER17_RS02990 RNA polymerase-associated protein RapA low > 75
Serratia liquefaciens MT49 0.61 IAI46_20850 aminomethyl-transferring glycine dehydrogenase 0.48 IAI46_03275 RNA polymerase-associated protein RapA low > 86
Rahnella sp. WP5 0.61 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase 0.48 EX31_RS03745 RNA polymerase-associated protein RapA low > 89
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.48 CSW01_12705 RNA polymerase-associated protein RapA low > 62

Not shown: 2 genomes with orthologs for AO353_08720 only; 14 genomes with orthologs for AO353_17155 only