Conservation of cofitness between Sama_1376 and Sama_0506 in Shewanella amazonensis SB2B

22 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_1376 methylmalonate-semialdehyde dehydrogenase (RefSeq) 1.0 Sama_0506 pseudouridine synthase (RefSeq) 0.55 4
Shewanella sp. ANA-3 0.89 Shewana3_2770 methylmalonate-semialdehyde dehydrogenase [acylating] (RefSeq) 0.68 Shewana3_3712 pseudouridine synthase (RefSeq) low > 73
Shewanella loihica PV-4 0.88 Shew_1668 methylmalonate-semialdehyde dehydrogenase (RefSeq) 0.53 Shew_3348 pseudouridine synthase (RefSeq) low > 60
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_05990 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) 0.33 AO353_19240 pseudouridine synthase low > 101
Pseudomonas sp. RS175 0.60 PFR28_00013 Methylmalonate-semialdehyde dehydrogenase [acylating] 0.31 PFR28_01002 hypothetical protein low > 88
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_5146 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) 0.33 PfGW456L13_2270 Similar to ribosomal large subunit pseudouridine synthase A low > 87
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_1229 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) 0.33 Pf1N1B4_239 Similar to ribosomal large subunit pseudouridine synthase A low > 87
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3452 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) 0.32 Pf6N2E2_2426 Similar to ribosomal large subunit pseudouridine synthase A low > 103
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_07870 methylmalonate-semialdehyde dehydrogenase 0.33 AO356_03000 pseudouridine synthase low > 104
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS25540 CoA-acylating methylmalonate-semialdehyde dehydrogenase 0.32 PFLU_RS08610 pseudouridine synthase low > 109
Pseudomonas fluorescens SBW25 0.58 PFLU_RS25540 CoA-acylating methylmalonate-semialdehyde dehydrogenase 0.32 PFLU_RS08610 pseudouridine synthase low > 109
Pseudomonas simiae WCS417 0.58 PS417_23725 methylmalonate-semialdehyde dehydrogenase 0.32 PS417_08655 pseudouridine synthase low > 88
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0689 methylmalonate-semialdehyde dehydrogenase (acylating) 0.32 Psyr_2133 Pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0689 methylmalonate-semialdehyde dehydrogenase (acylating) 0.32 Psyr_2133 Pseudouridine synthase low > 86
Pseudomonas putida KT2440 0.58 PP_4667 methylmalonate-semialdehyde dehydrogenase 0.30 PP_2110 putative ribosomal large subunit pseudouridine synthase low > 96
Acinetobacter radioresistens SK82 0.56 MPMX26_01550 Methylmalonate-semialdehyde dehydrogenase [acylating] 0.34 MPMX26_01205 hypothetical protein — —
Variovorax sp. OAS795 0.56 ABID97_RS19425 CoA-acylating methylmalonate-semialdehyde dehydrogenase 0.33 ABID97_RS25165 pseudouridine synthase low > 91
Variovorax sp. SCN45 0.56 GFF7377 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) 0.33 GFF1987 Pseudouridine synthase (EC 4.2.1.70), PA2043 type low > 127
Pseudomonas sp. S08-1 0.55 OH686_05865 methylmalonate-semialdehyde dehydrogenase (acylating) 0.31 OH686_18350 Pseudouridine synthase , type low > 80
Pseudomonas stutzeri RCH2 0.54 Psest_2436 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data) 0.32 Psest_3527 Pseudouridylate synthases, 23S RNA-specific low > 67
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.3689.1 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) 0.30 Xcc-8004.5337.1 Similar to ribosomal large subunit pseudouridine synthase A low > 74
Acidovorax sp. GW101-3H11 0.53 Ac3H11_2357 Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) 0.33 Ac3H11_4190 Similar to ribosomal large subunit pseudouridine synthase A low > 79
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS15395 methylmalonate-semialdehyde dehydrogenase 0.33 HSERO_RS13490 pseudouridine synthase low > 78

Not shown: 13 genomes with orthologs for Sama_1376 only; 7 genomes with orthologs for Sama_0506 only