Conservation of cofitness between BT3073 and BT0353 in Bacteroides thetaiotaomicron VPI-5482

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3073 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) 1.0 BT0353 putative sugar epimerase/aldolase (NCBI ptt file) 0.41 18
Bacteroides ovatus ATCC 8483 0.94 BACOVA_02724 TIM-barrel protein, nifR3 family 0.99 BACOVA_01712 putative L-ribulose-5-phosphate 4-epimerase low > 94
Phocaeicola vulgatus CL09T03C04 0.86 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB 0.92 HMPREF1058_RS15640 L-ribulose-5-phosphate 4-epimerase low > 67
Phocaeicola dorei CL03T12C01 0.85 ABI39_RS06125 tRNA dihydrouridine synthase DusB 0.92 ABI39_RS11630 L-ribulose-5-phosphate 4-epimerase low > 72
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_1531 putative TIM-barrel protein, nifR3 family 0.49 Echvi_0503 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data) low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.52 ABZR88_RS22340 tRNA dihydrouridine synthase DusB 0.51 ABZR88_RS14510 L-ribulose-5-phosphate 4-epimerase low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.52 CA265_RS21125 tRNA dihydrouridine synthase DusB 0.52 CA265_RS08620 L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data) low > 88
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.13 H281DRAFT_02706 L-fuculose-phosphate aldolase low > 103
Pseudomonas sp. S08-1 0.33 OH686_07610 tRNA-dihydrouridine synthase DusB 0.12 OH686_00685 methylthioribulose-1-phosphate dehydratase low > 80
Serratia liquefaciens MT49 0.33 IAI46_22775 tRNA dihydrouridine synthase DusB 0.62 IAI46_20980 L-ribulose-5-phosphate 4-epimerase low > 86
Rahnella sp. WP5 0.33 EX31_RS12180 tRNA dihydrouridine synthase DusB 0.62 EX31_RS04940 L-ribulose-5-phosphate 4-epimerase low > 89
Enterobacter sp. TBS_079 0.33 MPMX20_04169 tRNA-dihydrouridine synthase B 0.67 MPMX20_00475 L-ribulose-5-phosphate 4-epimerase UlaF low > 85
Dickeya dianthicola ME23 0.32 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.62 DZA65_RS13015 L-ribulose-5-phosphate 4-epimerase low > 75
Klebsiella michiganensis M5al 0.32 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.68 BWI76_RS02645 L-ribulose-5-phosphate 4-epimerase — —
Shewanella sp. ANA-3 0.32 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) 0.53 Shewana3_2065 araD L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data) low > 73
Dickeya dianthicola 67-19 0.32 HGI48_RS01295 tRNA dihydrouridine synthase DusB 0.61 HGI48_RS12565 L-ribulose-5-phosphate 4-epimerase low > 71
Dickeya dadantii 3937 0.32 DDA3937_RS01375 tRNA dihydrouridine synthase DusB 0.61 DDA3937_RS12510 L-ribulose-5-phosphate 4-epimerase low > 74
Enterobacter asburiae PDN3 0.32 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 0.61 EX28DRAFT_3653 L-ribulose-5-phosphate 4-epimerase low > 76
Escherichia coli ECRC102 0.31 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB 0.69 NIAGMN_09975 ulaF L-ribulose-5-phosphate 4-epimerase UlaF — —
Escherichia coli ECRC101 0.31 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB 0.69 MCAODC_02640 ulaF L-ribulose-5-phosphate 4-epimerase UlaF — —
Escherichia coli BW25113 0.31 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.69 b4198 ulaF L-ribulose 5-phosphate 4-epimerase (NCBI) low > 76
Escherichia fergusonii Becca 0.31 EFB2_00564 tRNA-dihydrouridine synthase B 0.68 EFB2_04337 L-ribulose-5-phosphate 4-epimerase UlaF low > 86
Escherichia coli ECOR38 0.31 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB 0.68 HEPCGN_10355 ulaF L-ribulose-5-phosphate 4-epimerase UlaF low > 85
Marinobacter adhaerens HP15 0.31 HP15_3225 tRNA-dihydrouridine synthase B 0.14 HP15_1260 sugar aldolase low > 73
Escherichia coli ECRC101 0.31 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB 0.69 OKFHMN_12125 ulaF L-ribulose-5-phosphate 4-epimerase UlaF — —
Escherichia coli ECRC62 0.31 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB 0.69 BNILDI_07100 ulaF L-ribulose-5-phosphate 4-epimerase UlaF — —
Escherichia coli Nissle 1917 0.31 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB 0.68 ECOLIN_RS24360 L-ribulose-5-phosphate 4-epimerase UlaF low > 52
Escherichia coli ECOR27 0.31 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB 0.69 NOLOHH_04385 ulaF L-ribulose-5-phosphate 4-epimerase UlaF low > 57
Escherichia coli BL21 0.31 ECD_03118 tRNA-dihydrouridine synthase B 0.69 ECD_04065 L-ribulose 5-phosphate 4-epimerase low > 60
Pectobacterium carotovorum WPP14 0.31 HER17_RS20235 tRNA dihydrouridine synthase DusB 0.60 HER17_RS09405 L-ribulose-5-phosphate 4-epimerase low > 75
Pantoea sp. MT58 0.31 IAI47_02385 tRNA dihydrouridine synthase DusB 0.57 IAI47_09290 L-ribulose-5-phosphate 4-epimerase low > 76
Pseudomonas fluorescens GW456-L13 0.30 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.12 PfGW456L13_4163 Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109) low > 87
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_01495 tRNA dihydrouridine synthase DusB 0.63 CSW01_15190 L-ribulose-5-phosphate 4-epimerase low > 62
Escherichia coli ECRC99 0.29 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB 0.69 KEDOAH_16030 ulaF L-ribulose-5-phosphate 4-epimerase UlaF — —
Escherichia coli ECRC98 0.29 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB 0.69 JDDGAC_15765 ulaF L-ribulose-5-phosphate 4-epimerase UlaF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_00445 putative tRNA-dihydrouridine synthase 0.69 OHPLBJKB_03844 L-ribulose-5-phosphate 4-epimerase UlaF low > 73
Mycobacterium tuberculosis H37Rv 0.23 Rv0823c Possible transcriptional regulatory protein 0.18 Rv0727c Possible L-fuculose phosphate aldolase FucA (L-fuculose-1-phosphate aldolase) low > 58

Not shown: 52 genomes with orthologs for BT3073 only; 2 genomes with orthologs for BT0353 only