Conservation of cofitness between SO4730 and SO2913 in Shewanella oneidensis MR-1

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO4730 hemN oxygen-independent coproporphyrinogen III oxidase (NCBI ptt file) 1.0 SO2913 pflA pyruvate formate-lyase 1 activating enzyme (NCBI ptt file) 0.47 5
Shewanella sp. ANA-3 0.96 Shewana3_4116 coproporphyrinogen III oxidase (RefSeq) 0.99 Shewana3_1554 pflA pyruvate formate lyase-activating enzyme 1 (RefSeq) low > 73
Shewanella loihica PV-4 0.89 Shew_3720 coproporphyrinogen III oxidase (RefSeq) 0.83 Shew_2391 pflA pyruvate formate lyase-activating enzyme 1 (RefSeq) low > 60
Shewanella amazonensis SB2B 0.87 Sama_0086 coproporphyrinogen III oxidase (RefSeq) 0.84 Sama_1497 pflA pyruvate formate lyase-activating enzyme 1 (RefSeq) low > 62
Enterobacter sp. TBS_079 0.67 MPMX20_04598 Oxygen-independent coproporphyrinogen III oxidase 0.72 MPMX20_01561 Pyruvate formate-lyase 1-activating enzyme low > 85
Escherichia coli ECRC99 0.66 KEDOAH_14030 hemN oxygen-independent coproporphyrinogen III oxidase 0.72 KEDOAH_22220 pflA pyruvate formate lyase 1-activating protein
Escherichia coli BL21 0.66 ECD_03752 coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent 0.72 ECD_00906 pyruvate formate-lyase 1-activating enzyme; [formate-C-acetyltransferase 1]-activating enzyme; PFL activase
Escherichia coli BW25113 0.66 b3867 hemN O2-independent coproporphyrinogen III oxidase (VIMSS) 0.72 b0902 pflA pyruvate formate lyase activating enzyme 1 (NCBI) 0.31 39
Escherichia coli ECOR27 0.66 NOLOHH_06250 hemN oxygen-independent coproporphyrinogen III oxidase 0.72 NOLOHH_22075 pflA pyruvate formate lyase 1-activating protein low > 75
Escherichia coli ECRC102 0.66 NIAGMN_11875 hemN oxygen-independent coproporphyrinogen III oxidase 0.72 NIAGMN_03235 pflA pyruvate formate lyase 1-activating protein
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_04186 Oxygen-independent coproporphyrinogen III oxidase 0.72 OHPLBJKB_02766 Pyruvate formate-lyase 1-activating enzyme low > 73
Escherichia coli ECRC98 0.66 JDDGAC_17745 hemN oxygen-independent coproporphyrinogen III oxidase 0.72 JDDGAC_09325 pflA pyruvate formate lyase 1-activating protein low > 86
Escherichia coli ECRC101 0.66 MCAODC_04620 hemN oxygen-independent coproporphyrinogen III oxidase 0.72 MCAODC_24905 pflA pyruvate formate lyase 1-activating protein low > 87
Escherichia coli ECRC100 0.66 OKFHMN_14120 hemN oxygen-independent coproporphyrinogen III oxidase 0.72 OKFHMN_05515 pflA pyruvate formate lyase 1-activating protein low > 80
Escherichia coli ECRC62 0.66 BNILDI_05280 hemN oxygen-independent coproporphyrinogen III oxidase 0.72 BNILDI_20330 pflA pyruvate formate lyase 1-activating protein low > 75
Escherichia coli Nissle 1917 0.66 ECOLIN_RS22285 oxygen-independent coproporphyrinogen III oxidase 0.72 ECOLIN_RS04780 pyruvate formate lyase 1-activating protein
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4348 oxygen-independent coproporphyrinogen III oxidase 0.71 EX28DRAFT_2033 pyruvate formate-lyase 1-activating enzyme low > 76
Escherichia fergusonii Becca 0.66 EFB2_04750 Oxygen-independent coproporphyrinogen III oxidase 0.72 EFB2_03162 Pyruvate formate-lyase 1-activating enzyme low > 86
Escherichia coli ECOR38 0.66 HEPCGN_12755 hemN oxygen-independent coproporphyrinogen III oxidase 0.72 HEPCGN_23005 pflA pyruvate formate lyase 1-activating protein low > 87
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_00590 oxygen-independent coproporphyrinogen III oxidase 0.68 CSW01_09365 pyruvate formate lyase 1-activating protein low > 62
Dickeya dadantii 3937 0.66 DDA3937_RS00120 oxygen-independent coproporphyrinogen III oxidase 0.74 DDA3937_RS09650 pyruvate formate lyase 1-activating protein 0.75 5
Dickeya dianthicola ME23 0.66 DZA65_RS22220 oxygen-independent coproporphyrinogen III oxidase 0.73 DZA65_RS09970 pyruvate formate lyase 1-activating protein low > 75
Klebsiella michiganensis M5al 0.66 BWI76_RS00380 oxygen-independent coproporphyrinogen III oxidase 0.71 BWI76_RS09730 pyruvate formate lyase 1-activating protein low > 92
Serratia liquefaciens MT49 0.66 IAI46_24970 oxygen-independent coproporphyrinogen III oxidase 0.73 IAI46_08605 pyruvate formate lyase 1-activating protein 0.82 7
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF2219 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) 0.62 GFF3656 Pyruvate formate-lyase activating enzyme (EC 1.97.1.4) low > 78
Dickeya dianthicola 67-19 0.65 HGI48_RS21245 oxygen-independent coproporphyrinogen III oxidase 0.74 HGI48_RS09660 pyruvate formate lyase 1-activating protein 0.40 56
Pantoea sp. MT58 0.65 IAI47_00445 oxygen-independent coproporphyrinogen III oxidase 0.72 IAI47_12885 pyruvate formate lyase 1-activating protein 0.77 2
Rahnella sp. WP5 0.64 EX31_RS15885 oxygen-independent coproporphyrinogen III oxidase 0.74 EX31_RS18470 pyruvate formate lyase 1-activating protein low > 89
Pectobacterium carotovorum WPP14 0.63 HER17_RS21450 oxygen-independent coproporphyrinogen III oxidase 0.74 HER17_RS12310 pyruvate formate lyase 1-activating protein 0.79 24
Erwinia tracheiphila SCR3 0.60 LU632_RS22115 hemN oxygen-independent coproporphyrinogen III oxidase 0.69 LU632_RS09770 pflA pyruvate formate lyase 1-activating protein low > 74
Azospirillum sp. SherDot2 0.34 MPMX19_02313 Oxygen-independent coproporphyrinogen III oxidase 0.41 MPMX19_04846 Pyruvate formate-lyase 1-activating enzyme low > 112
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS13395 oxygen-independent coproporphyrinogen III oxidase 0.46 HMPREF1078_RS04215 pyruvate formate-lyase-activating protein low > 61
Azospirillum brasilense Sp245 0.33 AZOBR_RS03710 coproporphyrinogen III oxidase 0.39 AZOBR_RS30150 pyruvate formate lyase-activating protein 0.61 85
Rhodospirillum rubrum S1H 0.31 Rru_A2504 Oxygen-independent coproporphyrinogen III oxidase HemN (NCBI) 0.38 Rru_A2999 Radical SAM (NCBI)
Bacteroides ovatus ATCC 8483 0.11 BACOVA_00795 radical SAM domain protein 0.37 BACOVA_05596 pyruvate formate-lyase 1-activating enzyme low > 94

Not shown: 54 genomes with orthologs for SO4730 only; 7 genomes with orthologs for SO2913 only