Conservation of cofitness between SO2094 and SO2098 in Shewanella oneidensis MR-1

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO2094 hypF hydrogenase maturation protein HypF (NCBI ptt file) 1.0 SO2098 hyaB quinone-reactive Ni/Fe hydrogenase, large subunit (NCBI ptt file) 0.38 10
Shewanella sp. ANA-3 0.84 Shewana3_1875 (NiFe) hydrogenase maturation protein HypF (RefSeq) 0.98 Shewana3_1879 nickel-dependent hydrogenase, large subunit (RefSeq) low > 73
Shewanella loihica PV-4 0.50 Shew_1760 (NiFe) hydrogenase maturation protein HypF (RefSeq) 0.90 Shew_1764 nickel-dependent hydrogenase, large subunit (RefSeq) low > 60
Shewanella amazonensis SB2B 0.45 Sama_1674 hydrogenase maturation protein HypF (RefSeq) 0.93 Sama_1678 hydrogenase large chain (RefSeq) low > 62
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU3067 hypF [NiFe] hydrogenase maturation protein HypF (TIGR) 0.41 DVU1922 hynA-1 periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 (TIGR) low > 55
Synechocystis sp000284455 PCC 6803 0.30 SGL_RS13225 carbamoyltransferase HypF 0.08 SGL_RS09725 Ni/Fe hydrogenase subunit alpha 0.59 29
Rhodopseudomonas palustris CGA009 0.29 TX73_005020 carbamoyltransferase HypF 0.41 TX73_004960 nickel-dependent hydrogenase large subunit 0.26 81
Xanthobacter sp. DMC5 0.28 GFF2242 Carbamoyltransferase HypF 0.39 GFF4443 Uptake hydrogenase large subunit — —
Desulfovibrio vulgaris Miyazaki F 0.27 DvMF_2355 (NiFe) hydrogenase maturation protein HypF (RefSeq) 0.41 DvMF_0270 nickel-dependent hydrogenase large subunit (RefSeq) — —
Azospirillum brasilense Sp245 0.26 AZOBR_RS20340 carbamoyltransferase 0.39 AZOBR_RS20390 hydrogenase 2 large subunit low > 97
Dickeya dianthicola 67-19 0.26 HGI48_RS14175 carbamoyltransferase HypF 0.40 HGI48_RS14215 hydrogenase 2 large subunit low > 71
Dechlorosoma suillum PS 0.26 Dsui_1162 (NiFe) hydrogenase maturation protein HypF 0.39 Dsui_3009 Ni,Fe-hydrogenase I large subunit low > 51
Azospirillum sp. SherDot2 0.26 MPMX19_05285 Carbamoyltransferase HypF 0.38 MPMX19_05287 Uptake hydrogenase large subunit low > 112
Dickeya dianthicola ME23 0.25 DZA65_RS14850 carbamoyltransferase HypF 0.40 DZA65_RS14890 hydrogenase 2 large subunit low > 75
Dickeya dadantii 3937 0.25 DDA3937_RS14195 carbamoyltransferase HypF 0.41 DDA3937_RS14240 hydrogenase 2 large subunit low > 74
Alteromonas macleodii MIT1002 0.24 MIT1002_00281 Carbamoyltransferase HypF 0.37 MIT1002_00275 Hydrogenase-1 large chain low > 70
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF4706 [NiFe] hydrogenase metallocenter assembly protein HypF 0.42 GFF3105 Uptake hydrogenase large subunit (EC 1.12.99.6) low > 78
Escherichia coli ECRC62 0.23 BNILDI_11040 hypF carbamoyltransferase HypF 0.42 BNILDI_00720 hybC hydrogenase 2 large subunit low > 75
Escherichia coli ECRC102 0.23 NIAGMN_18405 hypF carbamoyltransferase HypF 0.42 NIAGMN_16785 hybC hydrogenase 2 large subunit low > 80
Escherichia coli ECRC99 0.23 KEDOAH_07500 hypF carbamoyltransferase HypF 0.42 KEDOAH_09125 hybC hydrogenase 2 large subunit — —
Escherichia coli ECRC100 0.23 OKFHMN_20635 hypF carbamoyltransferase HypF 0.42 OKFHMN_19020 hybC hydrogenase 2 large subunit low > 79
Escherichia coli ECRC98 0.23 JDDGAC_24300 hypF carbamoyltransferase HypF 0.42 JDDGAC_22655 hybC hydrogenase 2 large subunit low > 87
Escherichia coli ECRC101 0.23 MCAODC_11160 hypF carbamoyltransferase HypF 0.42 MCAODC_09535 hybC hydrogenase 2 large subunit low > 87
Escherichia coli BL21 0.23 ECD_02562 carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein 0.42 ECD_02870 hydrogenase 2, large subunit 0.70 36
Escherichia coli ECOR27 0.23 NOLOHH_12480 hypF carbamoyltransferase HypF 0.42 NOLOHH_10795 hybC hydrogenase 2 large subunit low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_01022 Carbamoyltransferase HypF 0.42 OHPLBJKB_00705 Hydrogenase-2 large chain low > 74
Escherichia coli BW25113 0.23 b2712 hypF carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases (NCBI) 0.42 b2994 hybC hydrogenase 2, large subunit (NCBI) 0.62 3
Escherichia coli ECOR38 0.23 HEPCGN_19835 hypF carbamoyltransferase HypF 0.42 HEPCGN_17880 hybC hydrogenase 2 large subunit low > 88
Escherichia coli Nissle 1917 0.23 ECOLIN_RS15155 carbamoyltransferase HypF 0.42 ECOLIN_RS17250 hydrogenase 2 large subunit low > 55
Escherichia fergusonii Becca 0.23 EFB2_01212 Carbamoyltransferase HypF 0.42 EFB2_00813 Hydrogenase-2 large chain 0.63 24
Methanococcus maripaludis JJ 0.22 MMJJ_RS04685 carbamoyltransferase HypF 0.09 MMJJ_RS00865 Ni/Fe hydrogenase subunit alpha low > 28
Rhodospirillum rubrum S1H 0.22 Rru_A0308 Hydrogenase maturation protein HypF (NCBI) 0.39 Rru_A1162 Nickel-dependent hydrogenase, large subunit (NCBI) low > 58

Not shown: 9 genomes with orthologs for SO2094 only; 3 genomes with orthologs for SO2098 only