Conservation of cofitness between b2029 and b3204 in Escherichia coli BW25113

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2029 gnd 6-phosphogluconate dehydrogenase (NCBI) 1.0 b3204 ptsN sugar-specific enzyme IIA component of PTS (NCBI) 0.56 4
Escherichia coli Nissle 1917 1.00 ECOLIN_RS11990 NADP-dependent phosphogluconate dehydrogenase 0.99 ECOLIN_RS18435 PTS IIA-like nitrogen regulatory protein PtsN
Escherichia coli ECOR27 1.00 NOLOHH_15785 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 NOLOHH_09730 ptsN PTS IIA-like nitrogen regulatory protein PtsN
Escherichia fergusonii Becca 1.00 EFB2_01826 6-phosphogluconate dehydrogenase, decarboxylating 0.99 EFB2_00619 Nitrogen regulatory protein low > 86
Escherichia coli ECRC102 1.00 NIAGMN_22415 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 NIAGMN_15690 ptsN PTS IIA-like nitrogen regulatory protein PtsN
Escherichia coli ECRC99 1.00 KEDOAH_03680 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 KEDOAH_10220 ptsN PTS IIA-like nitrogen regulatory protein PtsN
Escherichia coli ECRC98 1.00 JDDGAC_28580 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 JDDGAC_21555 ptsN PTS IIA-like nitrogen regulatory protein PtsN
Escherichia coli ECRC101 1.00 MCAODC_20470 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 MCAODC_08450 ptsN PTS IIA-like nitrogen regulatory protein PtsN
Escherichia coli ECRC101 1.00 OKFHMN_24470 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 OKFHMN_17930 ptsN PTS IIA-like nitrogen regulatory protein PtsN
Escherichia coli ECRC62 0.99 BNILDI_14695 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 BNILDI_01805 ptsN PTS IIA-like nitrogen regulatory protein PtsN
Escherichia coli BL21 0.99 ECD_01931 6-phosphogluconate dehydrogenase, decarboxylating 1.00 ECD_03069 sugar-specific enzyme IIA component of PTS
Escherichia coli ECOR38 0.99 HEPCGN_03175 gndA NADP-dependent phosphogluconate dehydrogenase 1.00 HEPCGN_16805 ptsN PTS IIA-like nitrogen regulatory protein PtsN low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF3903 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) 0.95 GFF2948 PTS system nitrogen-specific IIA component, PtsN low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_01659 6-phosphogluconate dehydrogenase, decarboxylating 1.00 OHPLBJKB_00496 Nitrogen regulatory protein low > 73
Enterobacter asburiae PDN3 0.96 EX28DRAFT_0529 6-phosphogluconate dehydrogenase (decarboxylating) 0.93 EX28DRAFT_3258 PTS IIA-like nitrogen-regulatory protein PtsN
Enterobacter sp. TBS_079 0.96 MPMX20_03014 6-phosphogluconate dehydrogenase, decarboxylating 0.93 MPMX20_04110 Nitrogen regulatory protein low > 85
Klebsiella michiganensis M5al 0.95 BWI76_RS19025 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) 0.90 BWI76_RS25275 PTS IIA-like nitrogen regulatory protein PtsN
Serratia liquefaciens MT49 0.89 IAI46_08160 NADP-dependent phosphogluconate dehydrogenase 0.85 IAI46_22480 PTS IIA-like nitrogen regulatory protein PtsN
Dickeya dadantii 3937 0.89 DDA3937_RS06805 NADP-dependent phosphogluconate dehydrogenase 0.81 DDA3937_RS01520 PTS IIA-like nitrogen regulatory protein PtsN low > 74
Pantoea sp. MT58 0.89 IAI47_07035 NADP-dependent phosphogluconate dehydrogenase 0.83 IAI47_17195 PTS IIA-like nitrogen regulatory protein PtsN
Rahnella sp. WP5 0.88 EX31_RS11475 NADP-dependent phosphogluconate dehydrogenase 0.83 EX31_RS12390 PTS IIA-like nitrogen regulatory protein PtsN
Pectobacterium carotovorum WPP14 0.88 HER17_RS14505 NADP-dependent phosphogluconate dehydrogenase 0.78 HER17_RS20070 PTS IIA-like nitrogen regulatory protein PtsN low > 75
Dickeya dianthicola ME23 0.88 DZA65_RS07180 NADP-dependent phosphogluconate dehydrogenase 0.81 DZA65_RS01500 PTS IIA-like nitrogen regulatory protein PtsN low > 75
Dickeya dianthicola 67-19 0.87 HGI48_RS06840 NADP-dependent phosphogluconate dehydrogenase 0.82 HGI48_RS01435 PTS IIA-like nitrogen regulatory protein PtsN low > 71
Erwinia tracheiphila SCR3 0.87 LU632_RS08890 gndA NADP-dependent phosphogluconate dehydrogenase 0.77 LU632_RS21290 ptsN PTS IIA-like nitrogen regulatory protein PtsN
Burkholderia phytofirmans PsJN 0.73 BPHYT_RS29625 6-phosphogluconate dehydrogenase 0.28 BPHYT_RS02895 PTS sugar transporter subunit IIA
Variovorax sp. SCN45 0.55 GFF2954 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) 0.28 GFF7294 PTS IIA-like nitrogen-regulatory protein PtsN low > 127
Variovorax sp. OAS795 0.55 ABID97_RS10190 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase 0.29 ABID97_RS04495 PTS sugar transporter subunit IIA
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_18635 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) 0.54 CSW01_12825 PTS IIA-like nitrogen-regulatory protein PtsN
Sinorhizobium meliloti 1021 0.47 SMc04262 6-phosphogluconate dehydrogenase 0.37 SMc01141 nitrogen regulatory IIA protein
Rhizobium sp. OAE497 0.46 ABIE40_RS11035 NADP-dependent phosphogluconate dehydrogenase 0.36 ABIE40_RS01870 PTS IIA-like nitrogen regulatory protein PtsN
Alteromonas macleodii MIT1002 0.46 MIT1002_02397 6-phosphogluconate dehydrogenase, NADP(+)-dependent, decarboxylating 0.37 MIT1002_00825 Nitrogen regulatory protein low > 70
Agrobacterium fabrum C58 0.46 Atu1526 6-phosphogluconate dehydrogenase, decarboxylating 0.36 Atu0330 nitrogen regulatory IIA protein
Azospirillum brasilense Sp245 0.43 AZOBR_RS15725 6-phosphogluconate dehydrogenase 0.35 AZOBR_RS18880 nitrogen regulatory protein
Shewanella amazonensis SB2B 0.43 Sama_1365 6-phosphogluconate dehydrogenase (RefSeq) 0.45 Sama_3090 nitrogen regulatory IIA protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.43 SO1902 gnd 6-phosphogluconate dehydrogenase, decarboxylating (NCBI ptt file) 0.47 SO3963 ptsN nitrogen regulatory IIA protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.43 Shewana3_1677 6-phosphogluconate dehydrogenase (RefSeq) 0.48 Shewana3_0670 PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) low > 73
Shewanella loihica PV-4 0.43 Shew_2561 6-phosphogluconate dehydrogenase (RefSeq) 0.48 Shew_3313 PTS IIA-like nitrogen-regulatory protein PtsN (RefSeq) low > 60

Not shown: 16 genomes with orthologs for b2029 only; 35 genomes with orthologs for b3204 only