Conservation of cofitness between b0335 and b2140 in Escherichia coli BW25113

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b0335 prpE predicted propionyl-CoA synthetase with ATPase domain (NCBI) 1.0 b2140 dusC tRNA-dihydrouridine synthase C (NCBI) 0.20 14
Escherichia coli BL21 0.99 ECD_00289 propionate--CoA ligase 1.00 ECD_02069 tRNA-dihydrouridine synthase C low > 60
Escherichia coli ECRC62 0.99 BNILDI_23175 prpE propionate--CoA ligase 0.99 BNILDI_14105 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECOR27 0.99 NOLOHH_01760 prpE propionate--CoA ligase 0.99 NOLOHH_15155 dusC tRNA dihydrouridine(16) synthase DusC low > 57
Escherichia coli ECRC101 0.99 MCAODC_28115 prpE propionate--CoA ligase 0.99 MCAODC_14665 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECRC101 0.99 OKFHMN_08885 prpE propionate--CoA ligase 0.99 OKFHMN_23615 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECRC102 0.99 NIAGMN_06940 prpE propionate--CoA ligase 0.99 NIAGMN_21380 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECRC98 0.99 JDDGAC_12540 prpE propionate--CoA ligase 0.99 JDDGAC_27570 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_03336 Acetyl-coenzyme A synthetase 1.00 OHPLBJKB_01571 tRNA-dihydrouridine(16) synthase low > 73
Escherichia coli ECRC99 0.99 KEDOAH_19080 prpE propionate--CoA ligase 0.99 KEDOAH_04570 dusC tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS02165 propionate--CoA ligase 0.99 ECOLIN_RS25475 tRNA dihydrouridine(16) synthase DusC — —
Escherichia coli ECOR38 0.99 HEPCGN_07470 prpE propionate--CoA ligase 0.99 HEPCGN_22850 dusC tRNA dihydrouridine(16) synthase DusC low > 85
Escherichia fergusonii Becca 0.99 EFB2_03703 Acetyl-coenzyme A synthetase 0.99 EFB2_01716 tRNA-dihydrouridine(16) synthase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF4266 Propionate--CoA ligase (EC 6.2.1.17) 0.90 GFF3804 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 78
Acidovorax sp. GW101-3H11 0.64 Ac3H11_2208 Propionate--CoA ligase (EC 6.2.1.17) 0.39 Ac3H11_1465 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 79
Ralstonia solanacearum PSI07 0.64 RPSI07_RS15240 propionate--CoA ligase 0.40 RPSI07_RS16005 tRNA-dihydrouridine synthase C low > 81
Ralstonia solanacearum GMI1000 0.64 RS_RS07615 propionate--CoA ligase 0.40 RS_RS08240 tRNA-dihydrouridine synthase C low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF4880 Propionate--CoA ligase (EC 6.2.1.17) 0.40 GFF3560 tRNA-dihydrouridine synthase C (EC 1.-.-.-) low > 90
Ralstonia solanacearum UW163 0.64 UW163_RS15515 propionate--CoA ligase 0.38 UW163_RS14795 dihydrouridine synthase — —
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS02205 propionate--CoA ligase 0.38 RALBFv3_RS01485 dihydrouridine synthase low > 76
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS14155 propionate--CoA ligase 0.40 ABZR87_RS13280 tRNA-dihydrouridine synthase low > 80
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS13560 propionyl-CoA synthetase 0.39 RR42_RS07625 dihydrouridine synthase low > 128
Dechlorosoma suillum PS 0.63 Dsui_2925 propionate--CoA ligase 0.36 Dsui_2334 tRNA-dihydrouridine synthase low > 51
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS13830 acetyl-CoA synthetase 0.39 BPHYT_RS09165 tRNA-dihydrouridine synthase C low > 109
Shewanella sp. ANA-3 0.40 Shewana3_1675 AMP-dependent synthetase and ligase (RefSeq) 0.53 Shewana3_2452 dihydrouridine synthase, DuS (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.40 MIT1002_01463 Acetyl-coenzyme A synthetase 0.53 MIT1002_01411 putative tRNA-dihydrouridine synthase low > 70
Shewanella loihica PV-4 0.40 Shew_2568 AMP-dependent synthetase and ligase (RefSeq) 0.54 Shew_2242 dihydrouridine synthase, DuS (RefSeq) low > 60
Marinobacter adhaerens HP15 0.40 HP15_2053 PrpE protein 0.39 HP15_1398 tRNA-dihydrouridine synthase C low > 73
Pseudomonas putida KT2440 0.40 PP_2351 propionyl-CoA synthetase 0.40 PP_1981 tRNA-dihydrouridine synthase C low > 96
Shewanella amazonensis SB2B 0.39 Sama_1364 acyl-coenzyme A synthetase/AMP-(fatty) acid ligase (RefSeq) 0.53 Sama_1303 NifR3/Smm1 family protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_06755 acetate--CoA ligase 0.60 CSW01_05615 tRNA dihydrouridine(16) synthase DusC low > 62

Not shown: 22 genomes with orthologs for b0335 only; 26 genomes with orthologs for b2140 only