Conservation of cofitness between b3846 and b1422 in Escherichia coli BW25113

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3846 fadB fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase (NCBI) 1.0 b1422 ydcI putative transcriptional regulator LYSR-type (VIMSS) 0.23 13
Escherichia coli ECOR27 1.00 NOLOHH_06375 fadB fatty acid oxidation complex subunit alpha FadB 0.99 NOLOHH_19335 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_04207 Fatty acid oxidation complex subunit alpha 1.00 OHPLBJKB_02293 HTH-type transcriptional regulator CatM low > 73
Escherichia coli ECOR38 0.99 HEPCGN_12875 fadB fatty acid oxidation complex subunit alpha FadB 0.99 HEPCGN_26160 ydcI Uncharacterized HTH-type transcriptional regulator YdcI low > 85
Escherichia coli BL21 0.99 ECD_03737 fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 1.00 ECD_01379 putative DNA-binding transcriptional regulator low > 60
Escherichia coli ECRC62 0.99 BNILDI_05155 fadB fatty acid oxidation complex subunit alpha FadB 1.00 BNILDI_17790 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC98 0.99 JDDGAC_17870 fadB fatty acid oxidation complex subunit alpha FadB 0.99 JDDGAC_04145 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC101 0.99 OKFHMN_14245 fadB fatty acid oxidation complex subunit alpha FadB 0.99 OKFHMN_01655 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC102 0.99 NIAGMN_12000 fadB fatty acid oxidation complex subunit alpha FadB 0.99 NIAGMN_25790 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC99 0.99 KEDOAH_13905 fadB fatty acid oxidation complex subunit alpha FadB 0.99 KEDOAH_26785 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia coli ECRC101 0.99 MCAODC_04750 fadB fatty acid oxidation complex subunit alpha FadB 0.99 MCAODC_16280 ydcI Uncharacterized HTH-type transcriptional regulator YdcI — —
Escherichia fergusonii Becca 0.99 EFB2_04771 Fatty acid oxidation complex subunit alpha 1.00 EFB2_02558 HTH-type transcriptional regulator CatM low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.93 GFF273 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.85 GFF2615 LysR family transcriptional regulator YdcI low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS01365 multifunctional fatty acid oxidation complex subunit alpha 0.87 BWI76_RS13280 LysR family transcriptional regulator low > 92
Enterobacter sp. TBS_079 0.91 MPMX20_04436 Fatty acid oxidation complex subunit alpha 0.81 MPMX20_02212 HTH-type transcriptional regulator GbpR low > 85
Enterobacter asburiae PDN3 0.91 EX28DRAFT_4510 fatty oxidation complex, alpha subunit FadB 0.82 EX28DRAFT_1254 Transcriptional regulator low > 76
Serratia liquefaciens MT49 0.77 IAI46_01130 fatty acid oxidation complex subunit alpha FadB 0.51 IAI46_12810 LysR family transcriptional regulator low > 86
Pantoea sp. MT58 0.73 IAI47_18230 fatty acid oxidation complex subunit alpha FadB 0.67 IAI47_09590 LysR family transcriptional regulator low > 76
Pseudomonas putida KT2440 0.54 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.31 PP_1713 Transcriptional regulator PcaQ low > 96
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.28 Psyr_2121 regulatory protein, LysR:LysR, substrate-binding protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.28 Psyr_2121 regulatory protein, LysR:LysR, substrate-binding protein low > 86
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_2290 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.18 Pf6N2E2_1106 Chromosome initiation inhibitor — —
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_02330 multifunctional fatty acid oxidation complex subunit alpha 0.18 AO356_26165 LysR family transcriptional regulator — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_3903 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.28 Pf1N1B4_5585 LysR family transcriptional regulator YdcI — —
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_4041 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.18 PfGW456L13_3928 Chromosome initiation inhibitor low > 87
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF2109 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.17 GFF1153 Transcriptional regulator, LysR family low > 90
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_00916 short chain enoyl-CoA hydratase /3-hydroxyacyl-CoA dehydrogenase 0.35 H281DRAFT_03866 transcriptional regulator, LysR family low > 103
Burkholderia phytofirmans PsJN 0.23 BPHYT_RS09560 3-hydroxyacyl-CoA dehydrogenase 0.35 BPHYT_RS33450 LysR family transcriptional regulator low > 109
Paraburkholderia sabiae LMG 24235 0.23 QEN71_RS21890 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.35 QEN71_RS14825 pca operon transcription factor PcaQ low > 153
Ralstonia sp. UNC404CL21Col 0.23 ABZR87_RS12585 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.42 ABZR87_RS12080 pca operon transcription factor PcaQ low > 80
Ralstonia solanacearum GMI1000 0.22 RS_RS08885 3-hydroxyacyl-CoA dehydrogenase 0.41 RS_RS07250 pca operon transcription factor PcaQ low > 80
Ralstonia solanacearum PSI07 0.22 RPSI07_RS16345 3-hydroxyacyl-CoA dehydrogenase 0.40 RPSI07_RS16935 LysR family transcriptional regulator low > 81
Ralstonia solanacearum UW163 0.22 UW163_RS14440 3-hydroxyacyl-CoA dehydrogenase 0.42 UW163_RS13895 pca operon transcription factor PcaQ — —
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS01130 3-hydroxyacyl-CoA dehydrogenase 0.42 RALBFv3_RS00565 pca operon transcription factor PcaQ low > 76
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS11095 3-hydroxyacyl-CoA dehydrogenase 0.34 RR42_RS32070 LysR family transcriptional regulator low > 128

Not shown: 23 genomes with orthologs for b3846 only; 14 genomes with orthologs for b1422 only