Conservation of cofitness between b2052 and b1190 in Escherichia coli BW25113

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2052 fcl bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) 1.0 b1190 dadX alanine racemase (NCBI) 0.20 16
Escherichia coli ECRC62 1.00 BNILDI_14590 fcl GDP-L-fucose synthase 0.99 BNILDI_18885 dadX catabolic alanine racemase DadX — —
Escherichia coli BL21 1.00 ECD_01958 bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase 1.00 ECD_01165 alanine racemase, catabolic, PLP-binding — —
Escherichia fergusonii Becca 1.00 EFB2_01802 GDP-L-fucose synthase 0.99 EFB2_02742 Alanine racemase, catabolic low > 86
Escherichia coli ECRC98 1.00 JDDGAC_28460 fcl GDP-L-fucose synthase 0.99 JDDGAC_06215 dadX catabolic alanine racemase DadX — —
Escherichia coli ECRC101 1.00 MCAODC_20590 fcl GDP-L-fucose synthase 0.99 MCAODC_21875 dadX catabolic alanine racemase DadX — —
Escherichia coli ECRC99 1.00 KEDOAH_03800 fcl GDP-L-fucose synthase 0.99 KEDOAH_25310 dadX catabolic alanine racemase DadX — —
Escherichia coli ECOR27 1.00 NOLOHH_15680 fcl GDP-L-fucose synthase 0.99 NOLOHH_20720 dadX catabolic alanine racemase DadX — —
Escherichia coli ECRC102 1.00 NIAGMN_22295 fcl GDP-L-fucose synthase 0.99 NIAGMN_27925 dadX catabolic alanine racemase DadX — —
Escherichia coli ECRC101 1.00 OKFHMN_24350 fcl GDP-L-fucose synthase 0.99 OKFHMN_28295 dadX catabolic alanine racemase DadX — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS12090 GDP-L-fucose synthase 0.98 ECOLIN_RS07190 catabolic alanine racemase DadX — —
Escherichia coli ECOR38 0.99 HEPCGN_03050 fcl GDP-L-fucose synthase 0.99 HEPCGN_24755 dadX catabolic alanine racemase DadX low > 85
Enterobacter asburiae PDN3 0.93 EX28DRAFT_0503 Nucleoside-diphosphate-sugar epimerases 0.84 EX28DRAFT_0767 alanine racemase low > 76
Enterobacter sp. TBS_079 0.93 MPMX20_03034 GDP-L-fucose synthase 0.84 MPMX20_02698 Alanine racemase, catabolic low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF3876 GDP-L-fucose synthetase (EC 1.1.1.271) 0.88 GFF2803 Alanine racemase (EC 5.1.1.1) ## catabolic low > 78
Dechlorosoma suillum PS 0.67 Dsui_0086 nucleoside-diphosphate-sugar epimerase 0.45 Dsui_2411 alanine racemase — —
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS17885 GDP-L-fucose synthase 0.46 PFLU_RS29370 alanine racemase — —
Pseudomonas fluorescens SBW25 0.67 PFLU_RS17885 GDP-L-fucose synthase 0.46 PFLU_RS29370 alanine racemase — —
Castellaniella sp019104865 MT123 0.66 ABCV34_RS12930 GDP-L-fucose synthase 0.43 ABCV34_RS02335 alanine racemase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF1841 GDP-L-fucose synthetase (EC 1.1.1.271) 0.49 GFF1915 Alanine racemase (EC 5.1.1.1) — —
Desulfovibrio vulgaris Hildenborough JW710 0.58 DVU0090 wcaG GDP-fucose synthetase (TIGR) 0.21 DVU0955 alr alanine racemase (TIGR) — —
Variovorax sp. OAS795 0.57 ABID97_RS19130 GDP-L-fucose synthase 0.49 ABID97_RS03685 alanine racemase — —
Paraburkholderia graminis OAS925 0.56 ABIE53_000941 GDP-L-fucose synthase 0.60 ABIE53_002527 alanine racemase — —
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS21005 GDP-L-fucose synthase 0.57 RR42_RS12035 alanine racemase — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS26355 GDP-L-fucose synthase 0.59 QEN71_RS06315 alanine racemase — —
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS04005 GDP-L-fucose synthase 0.58 BPHYT_RS12240 alanine racemase — —
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_04777 GDP-L-fucose synthase 0.60 H281DRAFT_00589 alanine racemase — —
Variovorax sp. SCN45 0.55 GFF60 GDP-L-fucose synthetase (EC 1.1.1.271) 0.50 GFF5109 Alanine racemase (EC 5.1.1.1) — —
Azospirillum sp. SherDot2 0.52 MPMX19_05629 GDP-L-fucose synthase 0.19 MPMX19_06140 Alanine racemase, biosynthetic — —
Rhodospirillum rubrum S1H 0.51 Rru_A0254 NAD-dependent epimerase/dehydratase (NCBI) 0.19 Rru_A0409 Alanine racemase region (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00471 GDP-L-fucose synthase 0.24 CCNA_01733 alanine racemase low > 67
Caulobacter crescentus NA1000 0.50 CCNA_00471 GDP-L-fucose synthase 0.24 CCNA_01733 alanine racemase low > 66
Agrobacterium fabrum C58 0.48 Atu4790 GDP-fucose synthetase 0.23 Atu1080 alanine racemase low > 89
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS22065 EpiA 0.50 HSERO_RS10740 alanine racemase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.36 Echvi_4397 Nucleoside-diphosphate-sugar epimerases 0.18 Echvi_1545 alanine racemase low > 79
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS13020 NAD-dependent epimerase/dehydratase family protein 0.20 A4249_RS03755 alanine racemase — —

Not shown: 22 genomes with orthologs for b2052 only; 28 genomes with orthologs for b1190 only