Conservation of cofitness between b1333 and b0721 in Escherichia coli BW25113

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b1333 uspE stress-induced protein (NCBI) 1.0 b0721 sdhC succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI) 0.29 18
Escherichia coli ECOR38 1.00 HEPCGN_25920 uspE universal stress protein UspE 0.99 HEPCGN_01285 sdhC succinate dehydrogenase cytochrome b556 subunit low > 85
Escherichia coli ECRC98 1.00 JDDGAC_04790 uspE universal stress protein UspE 1.00 JDDGAC_10605 sdhC succinate dehydrogenase cytochrome b556 subunit — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS08000 universal stress protein UspE 0.99 ECOLIN_RS03845 succinate dehydrogenase cytochrome b556 subunit — —
Escherichia coli ECRC62 1.00 BNILDI_18095 uspE universal stress protein UspE 0.99 BNILDI_21330 sdhC succinate dehydrogenase cytochrome b556 subunit — —
Escherichia coli ECRC102 1.00 NIAGMN_26415 uspE universal stress protein UspE 1.00 NIAGMN_05000 sdhC succinate dehydrogenase cytochrome b556 subunit — —
Escherichia coli ECRC99 1.00 KEDOAH_26525 uspE universal stress protein UspE 1.00 KEDOAH_21015 sdhC succinate dehydrogenase cytochrome b556 subunit — —
Escherichia coli ECRC101 1.00 MCAODC_16025 uspE universal stress protein UspE 1.00 MCAODC_26170 sdhC succinate dehydrogenase cytochrome b556 subunit — —
Escherichia coli ECRC101 1.00 OKFHMN_02245 uspE universal stress protein UspE 1.00 OKFHMN_06950 sdhC succinate dehydrogenase cytochrome b556 subunit — —
Escherichia fergusonii Becca 1.00 EFB2_02594 Universal stress protein E 0.99 EFB2_03384 Succinate dehydrogenase cytochrome b556 subunit low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02349 Universal stress protein E 1.00 OHPLBJKB_02995 Succinate dehydrogenase cytochrome b556 subunit low > 73
Escherichia coli BL21 1.00 ECD_01310 stress-induced protein 1.00 ECD_00681 succinate dehydrogenase, membrane subunit, binds cytochrome b556 low > 60
Escherichia coli ECOR27 1.00 NOLOHH_19945 uspE universal stress protein UspE 1.00 NOLOHH_23335 sdhC succinate dehydrogenase cytochrome b556 subunit — —
Enterobacter asburiae PDN3 0.94 EX28DRAFT_1542 Universal stress protein UspA and related nucleotide-binding proteins 0.95 EX28DRAFT_2270 succinate dehydrogenase subunit C (EC 1.3.5.1) low > 76
Klebsiella michiganensis M5al 0.93 BWI76_RS16190 universal stress protein UspE 0.91 BWI76_RS08395 succinate dehydrogenase cytochrome b556 large subunit low > 92
Serratia liquefaciens MT49 0.85 IAI46_13265 universal stress protein UspE 0.72 IAI46_06255 succinate dehydrogenase cytochrome b556 subunit low > 86
Pantoea sp. MT58 0.84 IAI47_09575 universal stress protein UspE 0.74 IAI47_13765 succinate dehydrogenase cytochrome b556 subunit low > 76
Rahnella sp. WP5 0.83 EX31_RS07205 universal stress protein UspE 0.73 EX31_RS23420 succinate dehydrogenase cytochrome b556 subunit low > 89
Pectobacterium carotovorum WPP14 0.83 HER17_RS10520 universal stress protein UspE 0.82 HER17_RS14950 succinate dehydrogenase cytochrome b556 subunit low > 75
Dickeya dadantii 3937 0.83 DDA3937_RS10955 universal stress protein UspE 0.75 DDA3937_RS06440 succinate dehydrogenase cytochrome b556 subunit low > 74
Erwinia tracheiphila SCR3 0.82 LU632_RS11425 uspE universal stress protein UspE 0.69 LU632_RS16115 sdhC succinate dehydrogenase cytochrome b556 subunit low > 74
Dickeya dianthicola 67-19 0.81 HGI48_RS10905 universal stress protein UspE 0.74 HGI48_RS06480 succinate dehydrogenase cytochrome b556 subunit low > 71
Dickeya dianthicola ME23 0.81 DZA65_RS11365 universal stress protein UspE 0.72 DZA65_RS06825 succinate dehydrogenase cytochrome b556 subunit low > 75
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_07185 universal stress protein UspE 0.60 CSW01_10450 succinate dehydrogenase cytochrome b556 subunit — —
Shewanella oneidensis MR-1 0.55 SO2355 universal stress protein family (NCBI ptt file) 0.60 SO1927 sdhC succinate dehydrogenase, cytochrome b556 subunit (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.55 Sama_1800 universal stress protein UspE (RefSeq) 0.57 Sama_1423 succinate dehydrogenase, cytochrome b556 subunit (RefSeq) — —
Shewanella sp. ANA-3 0.54 Shewana3_2116 universal stress protein UspE (RefSeq) 0.61 Shewana3_1706 succinate dehydrogenase subunit C (RefSeq) — —
Shewanella loihica PV-4 0.54 Shew_1994 universal stress protein UspE (RefSeq) 0.57 Shew_1651 succinate dehydrogenase, cytochrome b subunit (RefSeq) — —
Alteromonas macleodii MIT1002 0.47 MIT1002_02138 Universal stress protein E 0.48 MIT1002_01944 Succinate dehydrogenase cytochrome b556 subunit — —
Pseudomonas stutzeri RCH2 0.21 Psest_2307 Universal stress protein UspA and related nucleotide-binding proteins 0.54 Psest_2498 succinate dehydrogenase, cytochrome b556 subunit — —
Pseudomonas simiae WCS417 0.20 PS417_14980 universal stress protein UspA 0.52 PS417_08875 succinate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS17010 universal stress protein A 0.52 PFLU_RS08935 succinate dehydrogenase, cytochrome b556 subunit — —
Pseudomonas fluorescens SBW25 0.20 PFLU_RS17010 universal stress protein A 0.52 PFLU_RS08935 succinate dehydrogenase, cytochrome b556 subunit — —
Pseudomonas putida KT2440 0.19 PP_2187 Universal stress protein family 0.51 PP_4193 succinate dehydrogenase membrane b-556 subunit — —
Pseudomonas sp. RS175 0.19 PFR28_02374 Universal stress protein E 0.52 PFR28_03100 Succinate dehydrogenase cytochrome b556 subunit — —
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_24400 universal stress protein UspA 0.54 AO356_19675 succinate dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.16 Dshi_0929 UspA domain protein (RefSeq) 0.25 Dshi_2867 Succinate dehydrogenase cytochrome b556 subunit (RefSeq) — —

Not shown: 7 genomes with orthologs for b1333 only; 30 genomes with orthologs for b0721 only