Conservation of cofitness between b2843 and b0208 in Escherichia coli BW25113

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2843 kduI 5-keto-4-deoxyuronate isomerase (NCBI) 1.0 b0208 yafC predicted DNA-binding transcriptional regulator (NCBI) 0.25 7
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00886 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.99 OHPLBJKB_03453 HTH-type transcriptional regulator DmlR low > 73
Escherichia coli BL21 1.00 ECD_02691 hexuronate isomerase 0.99 ECD_00201 LysR family putative transcriptional regulator low > 60
Escherichia coli ECRC62 1.00 BNILDI_10285 kduI 5-dehydro-4-deoxy-D-glucuronate isomerase 1.00 BNILDI_09325 yafC DNA-binding transcriptional regulator YafC — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS15955 5-dehydro-4-deoxy-D-glucuronate isomerase 0.98 ECOLIN_RS01140 DNA-binding transcriptional regulator YafC low > 52
Escherichia fergusonii Becca 1.00 EFB2_01040 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.98 EFB2_03835 HTH-type transcriptional regulator DmlR low > 86
Escherichia coli ECRC102 0.99 NIAGMN_17690 kduI 5-dehydro-4-deoxy-D-glucuronate isomerase 0.99 NIAGMN_07850 yafC DNA-binding transcriptional regulator YafC — —
Escherichia coli ECRC101 0.99 OKFHMN_19920 kduI 5-dehydro-4-deoxy-D-glucuronate isomerase 0.99 OKFHMN_10000 yafC DNA-binding transcriptional regulator YafC — —
Escherichia coli ECRC101 0.99 MCAODC_10445 kduI 5-dehydro-4-deoxy-D-glucuronate isomerase 0.99 MCAODC_00515 yafC DNA-binding transcriptional regulator YafC — —
Escherichia coli ECOR38 0.99 HEPCGN_19590 kduI 5-dehydro-4-deoxy-D-glucuronate isomerase 0.99 HEPCGN_07940 yafC DNA-binding transcriptional regulator YafC low > 85
Escherichia coli ECRC98 0.99 JDDGAC_23585 kduI 5-dehydro-4-deoxy-D-glucuronate isomerase 0.99 JDDGAC_13595 yafC DNA-binding transcriptional regulator YafC — —
Escherichia coli ECRC99 0.99 KEDOAH_08210 kduI 5-dehydro-4-deoxy-D-glucuronate isomerase 0.99 KEDOAH_18155 yafC DNA-binding transcriptional regulator YafC — —
Escherichia coli ECOR27 0.99 NOLOHH_11805 kduI 5-dehydro-4-deoxy-D-glucuronate isomerase 0.99 NOLOHH_02345 yafC DNA-binding transcriptional regulator YafC low > 57
Enterobacter sp. TBS_079 0.96 MPMX20_03716 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.91 MPMX20_00892 HTH-type transcriptional regulator DmlR low > 85
Enterobacter asburiae PDN3 0.93 EX28DRAFT_2922 5-keto 4-deoxyuronate isomerase 0.91 EX28DRAFT_2687 Transcriptional regulator low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF1328 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) 0.92 GFF4039 LysR family transcriptional regulator YafC low > 78
Rahnella sp. WP5 0.80 EX31_RS14105 5-dehydro-4-deoxy-D-glucuronate isomerase 0.63 EX31_RS21220 LysR family transcriptional regulator low > 89
Dickeya dianthicola ME23 0.80 DZA65_RS11715 5-dehydro-4-deoxy-D-glucuronate isomerase 0.28 DZA65_RS14665 LysR family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS11370 5-dehydro-4-deoxy-D-glucuronate isomerase 0.44 HGI48_RS01665 LysR family transcriptional regulator low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS11330 5-dehydro-4-deoxy-D-glucuronate isomerase 0.86 DDA3937_RS03655 LysR family transcriptional regulator low > 74
Pantoea sp. MT58 0.75 IAI47_11015 5-dehydro-4-deoxy-D-glucuronate isomerase 0.43 IAI47_03165 LysR family transcriptional regulator low > 76
Paraburkholderia sabiae LMG 24235 0.72 QEN71_RS37285 5-dehydro-4-deoxy-D-glucuronate isomerase 0.42 QEN71_RS38935 LysR family transcriptional regulator — —
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS20815 5-dehydro-4-deoxy-D-glucuronate isomerase 0.43 ABZR87_RS10585 LysR family transcriptional regulator low > 80
Paraburkholderia graminis OAS925 0.71 ABIE53_002284 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.44 ABIE53_001728 DNA-binding transcriptional LysR family regulator low > 113
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS10940 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.42 BPHYT_RS07550 LysR family transcriptional regulator — —
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_01158 4-deoxy-L-threo-5-hexulose uronate isomerase 0.43 H281DRAFT_04874 transcriptional regulator, LysR family — —
Pectobacterium carotovorum WPP14 0.70 HER17_RS01600 5-dehydro-4-deoxy-D-glucuronate isomerase 0.43 HER17_RS19795 LysR family transcriptional regulator low > 75
Azospirillum sp. SherDot2 0.56 MPMX19_05788 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.32 MPMX19_05002 HTH-type transcriptional regulator DmlR low > 112
Azospirillum brasilense Sp245 0.55 AZOBR_RS30225 5-keto-4-deoxyuronate isomerase 0.32 AZOBR_RS19720 LysR family transcriptional regulator low > 97
Rhizobium sp. OAE497 0.53 ABIE40_RS20640 5-dehydro-4-deoxy-D-glucuronate isomerase 0.31 ABIE40_RS06595 LysR family transcriptional regulator low > 107
Alteromonas macleodii MIT1002 0.49 MIT1002_02425 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.40 MIT1002_01180 D-malate degradation protein R low > 70
Sinorhizobium meliloti 1021 0.48 SMa0214 5-keto-4-deoxyuronate isomerase 0.31 SMc04055 transcriptional regulator low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS07660 5-dehydro-4-deoxy-D-glucuronate isomerase 0.29 A4249_RS02150 LysR substrate-binding domain-containing protein low > 48
Agrobacterium fabrum C58 0.44 Atu3142 5-keto-4-deoxyuronate isomerase 0.35 Atu4291 LysR family transcriptional regulator low > 89
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.206.1 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) 0.30 Xcc-8004.4707.1 Transcriptional regulator, LysR family low > 74
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_2967 5-keto 4-deoxyuronate isomerase 0.29 Ga0059261_0884 Transcriptional regulator low > 68
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_01558 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.25 CCNA_02602 LysR-family transcriptional regulator low > 67
Caulobacter crescentus NA1000 0.40 CCNA_01558 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase 0.25 CCNA_02602 LysR-family transcriptional regulator low > 66

Not shown: 11 genomes with orthologs for b2843 only; 40 genomes with orthologs for b0208 only