Conservation of cofitness between Xcc-8004.1566.1 and Xcc-8004.1107.1 in Xanthomonas campestris pv. campestris strain 8004

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1566.1 Putative activity regulator of membrane protease YbbK 1.0 Xcc-8004.1107.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (EC 6.3.2.-) 0.31 10
Lysobacter sp. OAE881 0.60 ABIE51_RS16375 NfeD family protein 0.72 ABIE51_RS17450 Mur ligase family protein low > 62
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS10540 NfeD family protein 0.63 ABZR86_RS17365 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS28890 NfeD family protein 0.53 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas fluorescens SBW25 0.42 PFLU_RS28890 NfeD family protein 0.53 PFLU_RS26735 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 109
Pseudomonas simiae WCS417 0.40 PS417_27230 membrane protein implicated in regulation of membrane protease activity 0.53 PS417_24800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 88
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_11260 ybbJ Membrane protein implicated in regulation of membrane protease activity 0.62 OKGIIK_17020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-m eso-2,6-diaminoheptandioate ligase low > 52
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_13050 hypothetical protein 0.51 AO356_15235 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 104
Rhodanobacter denitrificans MT42 0.38 LRK55_RS04150 NfeD family protein 0.61 LRK55_RS06355 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 63
Pseudomonas sp. S08-1 0.38 OH686_11150 Putative activity regulator of membrane protease YbbK 0.52 OH686_09400 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 80
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS04375 NfeD family protein 0.61 LRK54_RS06610 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 0.41 42
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0708 Membrane protein implicated in regulation of membrane protease activity 0.48 B158DRAFT_2035 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 40
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_4489 Putative activity regulator of membrane protease YbbK 0.51 Pf6N2E2_4982 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 103
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_906 Putative activity regulator of membrane protease YbbK 0.51 PfGW456L13_1344 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 87
Dickeya dianthicola ME23 0.33 DZA65_RS06235 NfeD family protein 0.49 DZA65_RS19650 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Dickeya dianthicola 67-19 0.33 HGI48_RS05900 NfeD family protein 0.49 HGI48_RS18515 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 71
Dickeya dadantii 3937 0.33 DDA3937_RS05855 NfeD family protein 0.49 DDA3937_RS18580 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Erwinia tracheiphila SCR3 0.31 LU632_RS15285 NfeD family protein 0.49 LU632_RS02135 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 74
Pectobacterium carotovorum WPP14 0.29 HER17_RS15615 NfeD family protein 0.49 HER17_RS02615 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 75
Klebsiella michiganensis M5al 0.29 BWI76_RS06915 membrane protein 0.50 BWI76_RS02820 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_03186 Inner membrane protein YbbJ 0.51 OHPLBJKB_03802 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 73
Escherichia coli ECOR38 0.28 HEPCGN_06640 ybbJ Inner membrane protein YbbJ 0.51 HEPCGN_10140 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Escherichia coli BW25113 0.28 b0488 ybbJ conserved inner membrane protein (RefSeq) 0.50 b4233 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) low > 76
Escherichia coli ECRC62 0.28 BNILDI_22415 ybbJ Inner membrane protein YbbJ 0.51 BNILDI_07315 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Escherichia coli ECOR27 0.28 NOLOHH_00995 ybbJ Inner membrane protein YbbJ 0.51 NOLOHH_04200 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 75
Enterobacter asburiae PDN3 0.28 EX28DRAFT_2472 Membrane protein implicated in regulation of membrane protease activity 0.50 EX28DRAFT_3420 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase low > 76
Escherichia coli BL21 0.28 ECD_00439 inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX 0.51 ECD_04101 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 61
Escherichia coli ECRC98 0.28 JDDGAC_11650 ybbJ Inner membrane protein YbbJ 0.51 JDDGAC_15580 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 86
Escherichia coli ECRC99 0.28 KEDOAH_19965 ybbJ Inner membrane protein YbbJ 0.51 KEDOAH_16215 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia fergusonii Becca 0.28 EFB2_03567 Inner membrane protein YbbJ 0.51 EFB2_04300 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 86
Escherichia coli ECRC101 0.28 MCAODC_27220 ybbJ Inner membrane protein YbbJ 0.51 MCAODC_02445 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase low > 87
Escherichia coli ECRC100 0.28 OKFHMN_08005 ybbJ Inner membrane protein YbbJ 0.51 OKFHMN_11940 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli ECRC102 0.28 NIAGMN_06055 ybbJ Inner membrane protein YbbJ 0.50 NIAGMN_09790 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase — —
Escherichia coli Nissle 1917 0.27 ECOLIN_RS02890 NfeD family protein 0.51 ECOLIN_RS24560 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase — —
Enterobacter sp. TBS_079 0.27 MPMX20_01086 Inner membrane protein YbbJ 0.50 MPMX20_00515 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.25 GFF4406 Putative activity regulator of membrane protease YbbK 0.50 GFF881 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (EC 6.3.2.-) low > 78
Pantoea sp. MT58 0.24 IAI47_14390 NfeD family protein 0.48 IAI47_02755 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 76
Serratia liquefaciens MT49 0.24 IAI46_05320 NfeD family protein 0.52 IAI46_01800 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase low > 86

Not shown: 8 genomes with orthologs for Xcc-8004.1566.1 only; 35 genomes with orthologs for Xcc-8004.1107.1 only