| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Cupriavidus basilensis FW507-4G11 | 1.0 | RR42_RS29055 | | AraC family transcriptional regulator | 1.0 | RR42_RS32060 | | protocatechuate 3,4-dioxygenase | 0.60 | 8 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS15620 | | helix-turn-helix domain-containing protein | 0.34 | QEN71_RS14835 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 153 |
| Pseudomonas putida KT2440 | 0.32 | PP_3538 | | transcriptional regulator | 0.34 | PP_4655 | | protocatechuate 3,4-dioxygenase alpha chain | 0.39 | 10 |
| Rhizobium sp. OAE497 | 0.31 | ABIE40_RS19570 | | helix-turn-helix domain-containing protein | 0.39 | ABIE40_RS19640 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 107 |
| Pseudomonas fluorescens SBW25-INTG | 0.30 | PFLU_RS07430 | | helix-turn-helix domain-containing protein | 0.53 | PFLU_RS06745 | | protocatechuate 3,4-dioxygenase subunit alpha | 0.83 | 10 |
| Pseudomonas fluorescens SBW25 | 0.30 | PFLU_RS07430 | | helix-turn-helix domain-containing protein | 0.53 | PFLU_RS06745 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.30 | Psyr_3499 | | transcriptional regulator, AraC family | 0.35 | Psyr_2123 | | protocatechuate 3,4-dioxygenase, alpha subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.30 | Psyr_3499 | | transcriptional regulator, AraC family | 0.35 | Psyr_2123 | | protocatechuate 3,4-dioxygenase, alpha subunit | low | > 86 |
| Pseudomonas simiae WCS417 | 0.29 | PS417_07325 | | AraC family transcriptional regulator | 0.55 | PS417_06720 | | protocatechuate 3,4-dioxygenase | low | > 88 |
| Paraburkholderia graminis OAS925 | 0.29 | ABIE53_001115 | | AraC family transcriptional activator of pobA | 0.34 | ABIE53_004920 | | protocatechuate 3,4-dioxygenase alpha subunit | low | > 113 |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_05530 | | hypothetical protein | 0.34 | MPMX19_05864 | | Protocatechuate 3,4-dioxygenase alpha chain | low | > 112 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.28 | Xcc-8004.465.1 | | Transcriptional regulator PobR, AraC family | 0.44 | Xcc-8004.479.1 | | Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) | low | > 74 |
| Pseudomonas fluorescens FW300-N1B4 | 0.27 | Pf1N1B4_702 | | Transcriptional regulator PobR, AraC family | 0.52 | Pf1N1B4_3236 | | Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.27 | AO353_03890 | | AraC family transcriptional regulator | 0.54 | AO353_17215 | | protocatechuate 3,4-dioxygenase | low | > 101 |
| Pseudomonas sp. RS175 | 0.27 | PFR28_00546 | | HTH-type transcriptional activator RhaS | 0.52 | PFR28_00624 | | Protocatechuate 3,4-dioxygenase alpha chain | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.26 | PfGW456L13_1788 | | Transcriptional regulator PobR, AraC family | 0.53 | PfGW456L13_4588 | | Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) | low | > 87 |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c02800 | | putative transcriptional regulator, AraC family | 0.35 | PGA1_c02550 | | protocatechuate 3,4-dioxygenase alpha chain | 0.16 | 53 |
| Pseudomonas fluorescens FW300-N2C3 | 0.26 | AO356_05290 | | AraC family transcriptional regulator | 0.51 | AO356_04920 | | protocatechuate 3,4-dioxygenase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.26 | Pf6N2E2_2913 | | Transcriptional regulator PobR, AraC family | 0.51 | Pf6N2E2_2833 | | Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) | 0.63 | 5 |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_02486 | | AraC-family transcriptional regulator | 0.40 | CCNA_02492 | | protocatechuate 3,4-dioxygenase alpha chain | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_02486 | | AraC-family transcriptional regulator | 0.40 | CCNA_02492 | | protocatechuate 3,4-dioxygenase alpha chain | low | > 67 |
| Agrobacterium fabrum C58 | 0.24 | Atu4545 | | AraC family transcriptional regulator | 0.38 | Atu4539 | | protocatechuate 3,4-dioxygenase alpha chain | 0.20 | 27 |
| Serratia liquefaciens MT49 | 0.20 | IAI46_02765 | | 4-hydroxyphenylacetate catabolism regulatory protein HpaA | 0.38 | IAI46_12805 | | protocatechuate 3,4-dioxygenase subunit alpha | low | > 86 |
| Klebsiella michiganensis M5al | 0.19 | BWI76_RS03835 | | 4-hydroxyphenylacetate catabolism regulatory protein HpaA | 0.41 | BWI76_RS13285 | | protocatechuate 3,4-dioxygenase subunit alpha | — | — |
Not shown: 22 genomes with orthologs for RR42_RS29055 only; 12 genomes with orthologs for RR42_RS32060 only