Conservation of cofitness between QEN71_RS41790 and QEN71_RS28080 in Paraburkholderia sabiae LMG 24235

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS41790 PDDEXK nuclease domain-containing protein 1.0 QEN71_RS28080 diaminopimelate decarboxylase 0.40 12
Castellaniella sp019104865 MT123 0.67 ABCV34_RS05470 PDDEXK nuclease domain-containing protein 0.60 ABCV34_RS12685 diaminopimelate decarboxylase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF2958 Putative uncharacterized protein YhcG 0.19 GFF1925 Diaminopimelate decarboxylase (EC 4.1.1.20) 0.39 37
Escherichia coli ECOR27 0.57 NOLOHH_09675 yhcG Putative nuclease YhcG 0.18 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 75
Variovorax sp. SCN45 0.57 GFF4895 FIG074102: hypothetical protein 0.58 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Escherichia coli ECRC62 0.57 BNILDI_01860 yhcG Putative nuclease YhcG 0.18 BNILDI_10310 lysA diaminopimelate decarboxylase low > 75
Escherichia coli ECRC99 0.57 KEDOAH_10275 yhcG Putative nuclease YhcG 0.19 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia fergusonii Becca 0.57 EFB2_00609 Putative nuclease YhcG 0.19 EFB2_01045 Diaminopimelate decarboxylase low > 86
Escherichia coli ECRC98 0.57 JDDGAC_21500 yhcG Putative nuclease YhcG 0.19 JDDGAC_23610 lysA diaminopimelate decarboxylase low > 86
Escherichia coli BW25113 0.56 b3220 yhcG hypothetical protein (NCBI) 0.18 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) low > 76
Escherichia coli ECOR38 0.56 HEPCGN_16750 DUF1016 domain-containing protein 0.19 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC101 0.55 MCAODC_08395 yhcG Putative nuclease YhcG 0.19 MCAODC_10470 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC100 0.55 OKFHMN_17875 yhcG Putative nuclease YhcG 0.19 OKFHMN_19945 lysA diaminopimelate decarboxylase low > 80
Escherichia coli ECRC102 0.55 NIAGMN_15635 yhcG Putative nuclease YhcG 0.19 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS16105 DUF1016 family protein 0.32 ABI39_RS19950 diaminopimelate decarboxylase low > 72
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS16065 DUF1016 family protein 0.32 HMPREF1058_RS06195 diaminopimelate decarboxylase low > 67
Bacteroides thetaiotaomicron VPI-5482 0.30 BT4519 conserved hypothetical protein (NCBI ptt file) 0.33 BT1374 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) low > 81
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_3850 FIG074102: hypothetical protein 0.58 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS00730 DUF1016 family protein 0.34 HMPREF1181_RS11050 diaminopimelate decarboxylase low > 56
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_1634 FIG074102: hypothetical protein 0.59 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_371 FIG074102: hypothetical protein 0.59 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 87
Ralstonia solanacearum GMI1000 0.27 RS_RS13135 DUF1016 domain-containing protein 0.73 RS_RS14930 diaminopimelate decarboxylase — —
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS05040 PDDEXK nuclease domain-containing protein 0.32 HMPREF1078_RS13545 diaminopimelate decarboxylase 0.62 46
Acinetobacter radioresistens SK82 0.26 MPMX26_02868 Putative nuclease YhcG 0.56 MPMX26_02232 Diaminopimelate decarboxylase low > 36
Dickeya dianthicola 67-19 0.25 HGI48_RS04120 DUF1016 family protein 0.20 HGI48_RS00505 type III PLP-dependent enzyme low > 71
Acidovorax sp. GW101-3H11 0.25 Ac3H11_1607 FIG074102: hypothetical protein 0.21 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_0608 Protein of unknown function DUF1016 0.59 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_0608 Protein of unknown function DUF1016 0.59 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25-INTG 0.23 PFLU_RS26815 DUF1016 domain-containing protein 0.57 PFLU_RS29265 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.23 PFLU_RS26815 DUF1016 domain-containing protein 0.57 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Azospirillum sp. SherDot2 0.21 MPMX19_05456 Putative nuclease YhcG 0.47 MPMX19_05819 Diaminopimelate decarboxylase — —
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_06417 Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family 0.85 H281DRAFT_05606 diaminopimelate decarboxylase — —
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS18515 hypothetical protein 0.33 CA265_RS09650 diaminopimelate decarboxylase 0.57 75
Bacteroides ovatus ATCC 8483 0.18 BACOVA_00473 hypothetical protein 0.33 BACOVA_00215 diaminopimelate decarboxylase low > 94

Not shown: 1 genomes with orthologs for QEN71_RS41790 only; 67 genomes with orthologs for QEN71_RS28080 only