| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_2485 | | RND efflux system, outer membrane lipoprotein, NodT | 1.0 | Psyr_4277 | | Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region | 0.37 | 7 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_2485 | | RND efflux system, outer membrane lipoprotein, NodT | 1.00 | Psyr_4277 | | Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region | low | > 86 |
| Pseudomonas fluorescens SBW25 | 0.72 | PFLU_RS13440 | | efflux transporter outer membrane subunit | 0.81 | PFLU_RS26250 | | ferredoxin--NADP reductase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.72 | PFLU_RS13440 | | efflux transporter outer membrane subunit | 0.81 | PFLU_RS26250 | | ferredoxin--NADP reductase | low | > 109 |
| Pseudomonas sp. RS175 | 0.72 | PFR28_02192 | | Cation efflux system protein CusC | 0.83 | PFR28_03796 | | Flavodoxin/ferredoxin--NADP reductase | low | > 88 |
| Pseudomonas simiae WCS417 | 0.71 | PS417_12755 | | RND transporter | 0.82 | PS417_24325 | | ferredoxin-NADP reductase | — | — |
| Pseudomonas lactucae CFBP13502 | 0.71 | GEMAOFIL_02799 | | Outer membrane protein OprM | 0.81 | GEMAOFIL_05018 | | Flavodoxin/ferredoxin--NADP reductase | low | > 96 |
| Pseudomonas sp. DMC3 | 0.71 | GFF3505 | | Outer membrane protein OprM | 0.85 | GFF3950 | | Flavodoxin/ferredoxin--NADP reductase | low | > 89 |
| Pseudomonas fluorescens GW456-L13 | 0.71 | PfGW456L13_3264 | | Heavy metal RND efflux outer membrane protein, CzcC family | 0.84 | PfGW456L13_1440 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | low | > 87 |
| Pseudomonas orientalis W4I3 | 0.71 | QF045_RS17100 | | efflux transporter outer membrane subunit | 0.81 | QF045_RS26620 | | ferredoxin--NADP reductase | low | > 93 |
| Pseudomonas fluorescens FW300-N2C3 | 0.70 | AO356_25885 | | RND transporter | 0.83 | AO356_15660 | | ferredoxin-NADP reductase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.70 | Pf6N2E2_1270 | | Heavy metal RND efflux outer membrane protein, CzcC family | 0.84 | Pf6N2E2_5072 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.70 | AO353_22905 | | RND transporter | 0.84 | AO353_13960 | | ferredoxin-NADP reductase | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.69 | COO64_RS14575 | | efflux transporter outer membrane subunit | 0.83 | COO64_RS02910 | | ferredoxin--NADP reductase | low | > 93 |
| Pseudomonas putida KT2440 | 0.69 | PP_3582 | | RND efflux transporter, outer membrane protein | 0.79 | PP_4646 | | ferredoxin--NADP(+) reductase | — | — |
| Pseudomonas sp. BP01 | 0.69 | JOY50_RS07340 | | efflux transporter outer membrane subunit | 0.79 | JOY50_RS15695 | | ferredoxin--NADP reductase | — | — |
| Pseudomonas aeruginosa PA14 | 0.59 | IKLFDK_12410 | | multidrug efflux RND transporter outer membrane subunit OpmB | 0.82 | IKLFDK_00435 | | ferredoxin--NADP(+) reductase | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.59 | DY961_RS05015 | opmB;inference=COORDINATES | multidrug efflux RND transporter outer membrane subunit OpmB | 0.81 | DY961_RS23350 | | ferredoxin--NADP reductase | low | > 100 |
| Pseudomonas segetis P6 | 0.59 | ACVTMO_RS11925 | | efflux transporter outer membrane subunit | 0.75 | ACVTMO_RS19755 | | ferredoxin--NADP reductase | low | > 75 |
| Pseudomonas aeruginosa PUPa3 | 0.58 | DQ20_RS35905 | opmB;inference=COORDINATES | multidrug efflux RND transporter outer membrane subunit OpmB | 0.82 | DQ20_RS55815 | | ferredoxin--NADP reductase | low | > 101 |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_2141 | | efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family | 0.79 | Psest_3439 | | Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 | low | > 67 |
| Pseudomonas sp. S08-1 | 0.55 | OH686_00935 | | Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system | 0.74 | OH686_16145 | | Ferredoxin--NADP(+) reductase or Flavodoxin--NADP(+) reductase | low | > 80 |
| Rahnella sp. WP5 | 0.47 | EX31_RS13370 | | efflux transporter outer membrane subunit | 0.35 | EX31_RS14285 | | ferredoxin--NADP(+) reductase | low | > 89 |
| Herbaspirillum seropedicae SmR1 | 0.47 | HSERO_RS07660 | | RND transporter | 0.43 | HSERO_RS07730 | | ferredoxin-NADP reductase | low | > 78 |
| Pantoea sp. MT58 | 0.44 | IAI47_16885 | | efflux transporter outer membrane subunit | 0.41 | IAI47_00810 | | ferredoxin--NADP(+) reductase | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.42 | PagCFBP13505_RS08980 | | efflux transporter outer membrane subunit | 0.40 | PagCFBP13505_RS18530 | | ferredoxin--NADP(+) reductase | low | > 74 |
| Acinetobacter baumannii LAC-4 | 0.28 | RR41_RS06060 | | multidrug efflux RND transporter outer membrane subunit AdeH | 0.47 | RR41_RS15430 | | ferredoxin--NADP reductase | — | — |
| Dechlorosoma suillum PS | 0.28 | Dsui_2027 | | efflux transporter, outer membrane factor lipoprotein, NodT family | 0.49 | Dsui_2127 | | flavodoxin reductase family protein | low | > 51 |
Not shown: 24 genomes with orthologs for Psyr_2485 only; 32 genomes with orthologs for Psyr_4277 only