Conservation of cofitness between Psyr_0506 and Psyr_0820 in Pseudomonas syringae pv. syringae B728a

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 1.0 Psyr_0820 transcriptional regulator, LacI family 0.28 18
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 1.00 Psyr_0820 transcriptional regulator, LacI family low > 86
Pseudomonas simiae WCS417 0.91 PS417_02175 transcriptional regulator 0.76 PS417_03960 transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.77 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_223 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.75 PfGW456L13_5077 Fructose repressor FruR, LacI family low > 87
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1489 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.79 Pf1N1B4_1147 Fructose repressor FruR, LacI family low > 87
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3685 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.78 Pf6N2E2_3340 Fructose repressor FruR, LacI family low > 103
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.77 PFLU_RS04005 catabolite repressor/activator low > 109
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_09015 transcriptional regulator 0.78 AO356_07340 transcriptional regulator low > 104
Pseudomonas sp. RS175 0.91 PFR28_05053 Bifunctional protein PutA 0.79 PFR28_00104 Catabolite repressor/activator low > 88
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_12810 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.77 AO353_05490 transcriptional regulator low > 101
Pseudomonas putida KT2440 0.88 PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase 0.70 PP_0792 catabolite repressor-activator, DNA-binding transcriptional dual regulator low > 96
Serratia liquefaciens MT49 0.76 IAI46_15745 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 IAI46_03385 catabolite repressor/activator low > 86
Rahnella sp. WP5 0.74 EX31_RS09420 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 EX31_RS03655 catabolite repressor/activator low > 89
Escherichia coli ECRC102 0.74 NIAGMN_23730 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 NIAGMN_08535 cra catabolite repressor/activator — —
Escherichia coli ECRC100 0.74 OKFHMN_04605 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 OKFHMN_10685 cra catabolite repressor/activator low > 80
Escherichia coli ECRC99 0.74 KEDOAH_23140 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 KEDOAH_17470 cra catabolite repressor/activator — —
Escherichia coli ECRC101 0.74 MCAODC_23990 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 MCAODC_01200 cra catabolite repressor/activator low > 87
Escherichia coli ECRC98 0.74 JDDGAC_08215 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 JDDGAC_14280 cra catabolite repressor/activator low > 86
Escherichia coli Nissle 1917 0.74 ECOLIN_RS05290 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 ECOLIN_RS00430 catabolite repressor/activator low > 55
Escherichia coli ECRC62 0.74 BNILDI_19670 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 BNILDI_08580 cra catabolite repressor/activator low > 75
Escherichia coli BW25113 0.74 b1014 putA fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI) 0.37 b0080 fruR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_02652 Bifunctional protein PutA 0.37 OHPLBJKB_03579 Catabolite repressor/activator low > 73
Escherichia coli ECOR38 0.74 HEPCGN_23535 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 HEPCGN_08665 cra catabolite repressor/activator low > 87
Escherichia coli ECOR27 0.74 NOLOHH_21505 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 NOLOHH_03030 cra catabolite repressor/activator low > 75
Escherichia fergusonii Becca 0.74 EFB2_03066 Bifunctional protein PutA 0.37 EFB2_03967 Catabolite repressor/activator low > 86
Escherichia coli BL21 0.74 ECD_01017 fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.37 ECD_00081 transcriptional repressor-activator for carbon metabolism low > 61
Klebsiella michiganensis M5al 0.73 BWI76_RS10795 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.37 BWI76_RS04705 DNA-binding transcriptional regulator FruR 0.29 21
Enterobacter asburiae PDN3 0.73 EX28DRAFT_1911 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.37 EX28DRAFT_3675 transcriptional regulator, LacI family low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_01702 Bifunctional protein PutA 0.37 MPMX20_00773 Catabolite repressor/activator low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3301 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.37 GFF158 Fructose repressor FruR, LacI family low > 78
Pantoea sp. MT58 0.71 IAI47_08195 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.38 IAI47_15980 catabolite repressor/activator low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS20115 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 DDA3937_RS18095 catabolite repressor/activator low > 74
Pectobacterium carotovorum WPP14 0.70 HER17_RS01110 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 HER17_RS03105 catabolite repressor/activator low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS20255 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 HGI48_RS18030 catabolite repressor/activator low > 71
Dickeya dianthicola ME23 0.70 DZA65_RS21300 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 DZA65_RS19175 catabolite repressor/activator low > 75
Erwinia tracheiphila SCR3 0.69 LU632_RS13740 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.37 LU632_RS02900 cra catabolite repressor/activator low > 74
Sinorhizobium meliloti 1021 0.53 SMc02181 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.14 SM_b20483 catabolite repressor protein low > 103
Agrobacterium fabrum C58 0.53 Atu4157 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.15 Atu4743 LacI family transcriptional regulator low > 89

Not shown: 25 genomes with orthologs for Psyr_0506 only; 3 genomes with orthologs for Psyr_0820 only