Conservation of cofitness between Psyr_4909 and Psyr_0506 in Pseudomonas syringae pv. syringae B728a

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4909 gamma-aminobutyrate:proton symporter, AAT family 1.0 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 0.49 4
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4909 gamma-aminobutyrate:proton symporter, AAT family 1.00 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase low > 86
Pseudomonas simiae WCS417 0.89 PS417_01505 gamma-aminobutyrate transporter 0.91 PS417_02175 transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.89 PFLU_RS01545 GABA permease 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.60 38
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS01545 GABA permease 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_12005 GABA permease 0.91 AO353_12810 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 101
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_375 transport permease protein of gamma-aminobutyrate 0.91 PfGW456L13_223 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 87
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_4195 transport permease protein of gamma-aminobutyrate 0.91 Pf6N2E2_3685 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 103
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_1639 transport permease protein of gamma-aminobutyrate 0.91 Pf1N1B4_1489 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) low > 87
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_11625 GABA permease 0.91 AO356_09015 transcriptional regulator 0.49 3
Pseudomonas sp. RS175 0.81 PFR28_04595 GABA permease 0.91 PFR28_05053 Bifunctional protein PutA low > 88
Pseudomonas putida KT2440 0.79 PP_0284 gamma-aminobutyrate permease 0.88 PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase low > 96
Pantoea sp. MT58 0.72 IAI47_19470 GABA permease 0.71 IAI47_08195 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 76
Escherichia coli ECRC102 0.67 NIAGMN_18670 gabP GABA permease 0.74 NIAGMN_23730 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.67 JDDGAC_24565 gabP GABA permease 0.74 JDDGAC_08215 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 86
Escherichia coli ECRC100 0.67 OKFHMN_20905 gabP GABA permease 0.74 OKFHMN_04605 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 80
Escherichia coli ECRC101 0.67 MCAODC_11425 gabP GABA permease 0.74 MCAODC_23990 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC99 0.67 KEDOAH_07235 gabP GABA permease 0.74 KEDOAH_23140 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli BL21 0.67 ECD_02519 gamma-aminobutyrate transporter 0.74 ECD_01017 fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase low > 61
Escherichia coli ECOR38 0.67 HEPCGN_20160 gabP GABA permease 0.74 HEPCGN_23535 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 87
Escherichia coli Nissle 1917 0.67 ECOLIN_RS14850 GABA permease 0.74 ECOLIN_RS05290 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01069 GABA permease 0.74 OHPLBJKB_02652 Bifunctional protein PutA low > 73
Escherichia coli BW25113 0.67 b2663 gabP gamma-aminobutyrate transporter (NCBI) 0.74 b1014 putA fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI) low > 76
Escherichia coli ECOR27 0.67 NOLOHH_12730 gabP GABA permease 0.74 NOLOHH_21505 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 75
Escherichia fergusonii Becca 0.67 EFB2_01267 GABA permease 0.74 EFB2_03066 Bifunctional protein PutA low > 86
Escherichia coli ECRC62 0.67 BNILDI_11290 gabP GABA permease 0.74 BNILDI_19670 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1568 gamma-aminobutyrate (GABA) permease 0.72 GFF3301 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) low > 78
Acinetobacter radioresistens SK82 0.56 MPMX26_01988 GABA permease 0.55 MPMX26_01466 Bifunctional protein PutA low > 36
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS31450 amino acid permease 0.64 QEN71_RS29240 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 153
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS21680 amino acid permease-associated protein 0.64 BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase low > 109
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS33780 GABA permease 0.70 RR42_RS20125 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) low > 128
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_01668 gamma-aminobutyrate:proton symporter, AAT family 0.64 H281DRAFT_02404 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase low > 103
Ralstonia solanacearum GMI1000 0.29 RS_RS08880 amino acid permease 0.69 RS_RS16540 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.28 RPSI07_RS16340 amino acid permease 0.68 RPSI07_RS08540 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase low > 81

Not shown: 5 genomes with orthologs for Psyr_4909 only; 30 genomes with orthologs for Psyr_0506 only