Conservation of cofitness between PP_3253 and PP_4922 in Pseudomonas putida KT2440

31 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3253 Carboxylate-amine ligase PP_3253 1.0 PP_4922 Phosphomethylpyrimidine synthase 0.15 9
Pseudomonas sp. RS175 0.43 PFR28_02107 Putative glutamate--cysteine ligase 2 0.92 PFR28_05091 Phosphomethylpyrimidine synthase low > 88
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_26955 carboxylate--amine ligase 0.92 AO356_08810 thiamine biosynthesis protein ThiC low > 104
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_1217 Gll2069 protein 0.92 Pf6N2E2_3644 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 103
Pseudomonas sp. S08-1 0.40 OH686_01215 hypothetical protein 0.91 OH686_15885 phosphomethylpyrimidine synthase low > 80
Bosea sp. OAE506 0.29 ABIE41_RS23095 carboxylate-amine ligase 0.63 ABIE41_RS02770 phosphomethylpyrimidine synthase ThiC low > 77
Rhodospirillum rubrum S1H 0.28 Rru_A2462 Enzymatic protein of unknown function (NCBI) 0.61 Rru_A2008 Thiamine biosynthesis protein ThiC (NCBI) low > 58
Azospirillum sp. SherDot2 0.27 MPMX19_00418 Putative glutamate--cysteine ligase 2 0.64 MPMX19_00336 Phosphomethylpyrimidine synthase low > 112
Dinoroseobacter shibae DFL-12 0.26 Dshi_1749 glutamate--cysteine ligase GCS2 (RefSeq) 0.65 Dshi_4080 thiamine biosynthesis protein ThiC (RefSeq) — —
Azospirillum brasilense Sp245 0.26 AZOBR_RS11345 carboxylate-amine ligase 0.67 AZOBR_RS07940 phosphomethylpyrimidine synthase low > 97
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS23695 carboxylate-amine ligase 0.75 CA265_RS20165 phosphomethylpyrimidine synthase ThiC low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS00410 carboxylate-amine ligase 0.75 ABZR88_RS08840 phosphomethylpyrimidine synthase ThiC low > 71
Mycobacterium tuberculosis H37Rv 0.19 Rv0433 Conserved hypothetical protein 0.53 Rv0423c Probable thiamine biosynthesis protein ThiC — —
Herbaspirillum seropedicae SmR1 0.15 HSERO_RS04340 gamma-glutamyl ligase 0.78 HSERO_RS02120 phosphomethylpyrimidine synthase ThiC 0.53 3
Hydrogenophaga sp. GW460-11-11-14-LB1 0.14 GFF358 FIG074102: hypothetical protein 0.68 GFF4626 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) low > 90
Acidovorax sp. GW101-3H11 0.13 Ac3H11_753 FIG074102: hypothetical protein 0.67 Ac3H11_2027 Hydroxymethylpyrimidine phosphate synthase ThiC (EC 4.1.99.17) — —
Enterobacter asburiae PDN3 0.13 EX28DRAFT_2417 carboxylate-amine ligase, YbdK family 0.72 EX28DRAFT_4536 phosphomethylpyrimidine synthase low > 76
Escherichia coli ECOR27 0.13 NOLOHH_24035 ybdK YbdK family carboxylate-amine ligase 0.72 NOLOHH_05520 thiC phosphomethylpyrimidine synthase ThiC low > 75
Enterobacter sp. TBS_079 0.13 MPMX20_01143 Putative glutamate--cysteine ligase 2 0.72 MPMX20_00217 Phosphomethylpyrimidine synthase low > 85
Escherichia coli ECRC62 0.13 BNILDI_22045 ybdK YbdK family carboxylate-amine ligase 0.72 BNILDI_06005 thiC phosphomethylpyrimidine synthase ThiC low > 75
Escherichia coli ECOR38 0.13 HEPCGN_00635 ybdK YbdK family carboxylate-amine ligase 0.72 HEPCGN_12010 thiC phosphomethylpyrimidine synthase ThiC low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_03128 Putative glutamate--cysteine ligase 2 0.72 OHPLBJKB_04056 Phosphomethylpyrimidine synthase low > 73
Escherichia coli BW25113 0.12 b0581 ybdK gamma-glutamyl:cysteine ligase (NCBI) 0.72 b3994 thiC thiamine biosynthesis protein ThiC (NCBI) low > 76
Escherichia coli BL21 0.12 ECD_00542 weak gamma-glutamyl:cysteine ligase 0.72 ECD_03871 phosphomethylpyrimidine synthase low > 61
Escherichia fergusonii Becca 0.12 EFB2_03513 Putative glutamate--cysteine ligase 2 0.72 EFB2_04617 Phosphomethylpyrimidine synthase low > 86
Escherichia coli ECRC99 0.12 KEDOAH_20315 ybdK YbdK family carboxylate-amine ligase 0.72 KEDOAH_14785 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC98 0.12 JDDGAC_11300 ybdK YbdK family carboxylate-amine ligase 0.72 JDDGAC_17000 thiC phosphomethylpyrimidine synthase ThiC low > 86
Escherichia coli ECRC101 0.12 MCAODC_26870 ybdK YbdK family carboxylate-amine ligase 0.72 MCAODC_03875 thiC phosphomethylpyrimidine synthase ThiC low > 87
Escherichia coli ECRC102 0.12 NIAGMN_05710 ybdK YbdK family carboxylate-amine ligase 0.72 NIAGMN_11125 thiC phosphomethylpyrimidine synthase ThiC — —
Escherichia coli ECRC100 0.12 OKFHMN_07655 ybdK YbdK family carboxylate-amine ligase 0.72 OKFHMN_13375 thiC phosphomethylpyrimidine synthase ThiC low > 80
Escherichia coli Nissle 1917 0.12 ECOLIN_RS03175 YbdK family carboxylate-amine ligase 0.72 ECOLIN_RS23040 phosphomethylpyrimidine synthase ThiC low > 55
Dechlorosoma suillum PS 0.11 Dsui_3392 carboxylate-amine ligase, YbdK family 0.77 Dsui_0422 thiamine biosynthesis protein ThiC — —

Not shown: 0 genomes with orthologs for PP_3253 only; 62 genomes with orthologs for PP_4922 only