| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 1.0 | PP_4799 | | putative Muramoyltetrapeptide carboxypeptidase | 0.53 | 5 |
| Pseudomonas simiae WCS417 | 0.78 | PS417_23875 | | molecular chaperone DnaK | 0.57 | PS417_24685 | | peptidase S66 | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.78 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | 0.58 | PfGW456L13_1368 | | Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.58 | PFLU_RS26615 | | LD-carboxypeptidase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.77 | AO356_16095 | | molecular chaperone DnaK | 0.61 | AO356_15350 | | peptidase S66 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | 0.58 | PFLU_RS26615 | | LD-carboxypeptidase | — | — |
| Pseudomonas sp. RS175 | 0.77 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | 0.57 | PFR28_03860 | | putative murein peptide carboxypeptidase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.76 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | 0.59 | Pf1N1B4_2700 | | Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.76 | AO353_14420 | | molecular chaperone DnaK | 0.62 | AO353_06435 | | peptidase S66 | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.30 | Psyr_1838 | | Peptidase U61, LD-carboxypeptidase A | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.30 | Psyr_1838 | | Peptidase U61, LD-carboxypeptidase A | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.68 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | 0.60 | Pf6N2E2_5006 | | Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) | 0.48 | 2 |
| Escherichia fergusonii Becca | 0.64 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | 0.17 | EFB2_02740 | | Murein tetrapeptide carboxypeptidase | low | > 86 |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | 0.16 | EX28DRAFT_0769 | | Uncharacterized proteins, homologs of microcin C7 resistance protein MccF | — | — |
| Escherichia coli ECRC101 | 0.64 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | 0.16 | MCAODC_21865 | ldcA | muramoyltetrapeptide carboxypeptidase | — | — |
| Escherichia coli BW25113 | 0.64 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | 0.17 | b1192 | ldcA | L,D-carboxypeptidase A (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.64 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | 0.17 | HEPCGN_24800 | ldcA | muramoyltetrapeptide carboxypeptidase | low | > 85 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.64 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | 0.17 | OHPLBJKB_02496 | | Murein tetrapeptide carboxypeptidase | — | — |
| Escherichia coli ECRC102 | 0.64 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | 0.16 | NIAGMN_27915 | ldcA | muramoyltetrapeptide carboxypeptidase | — | — |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | 0.19 | DDA3937_RS14040 | | LD-carboxypeptidase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.64 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | 0.18 | GFF2801 | | Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) | low | > 78 |
| Escherichia coli ECRC99 | 0.64 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | 0.16 | KEDOAH_25320 | ldcA | muramoyltetrapeptide carboxypeptidase | — | — |
| Escherichia coli ECRC62 | 0.64 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | 0.17 | BNILDI_18870 | ldcA | muramoyltetrapeptide carboxypeptidase | — | — |
| Escherichia coli ECRC98 | 0.64 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | 0.16 | JDDGAC_06190 | ldcA | muramoyltetrapeptide carboxypeptidase | — | — |
| Erwinia tracheiphila SCR3 | 0.64 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | 0.16 | LU632_RS14010 | ldcA | muramoyltetrapeptide carboxypeptidase | — | — |
| Escherichia coli ECOR27 | 0.64 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | 0.16 | NOLOHH_20705 | ldcA | muramoyltetrapeptide carboxypeptidase | — | — |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | 0.16 | MPMX20_02696 | | Murein tetrapeptide carboxypeptidase | low | > 85 |
| Escherichia coli BL21 | 0.64 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | 0.17 | ECD_01167 | | murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A | — | — |
| Escherichia coli Nissle 1917 | 0.64 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | 0.17 | ECOLIN_RS07200 | | muramoyltetrapeptide carboxypeptidase | — | — |
| Escherichia coli ECRC101 | 0.64 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | 0.16 | OKFHMN_28320 | ldcA | muramoyltetrapeptide carboxypeptidase | — | — |
| Rahnella sp. WP5 | 0.64 | EX31_RS03250 | | RNA polymerase-binding protein DksA | 0.17 | EX31_RS09000 | | LD-carboxypeptidase | low | > 89 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | 0.16 | CSW01_16365 | | LD-carboxypeptidase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.12 | A4249_RS10615 | | LD-carboxypeptidase | — | — |
| Ralstonia solanacearum PSI07 | 0.35 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | 0.20 | RPSI07_RS16875 | | muramoyltetrapeptide carboxypeptidase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.34 | HSERO_RS00840 | | molecular chaperone DnaK | 0.20 | HSERO_RS11050 | | peptidase S66 | — | — |
| Ralstonia solanacearum UW163 | 0.33 | UW163_RS03935 | | RNA polymerase-binding protein DksA | 0.20 | UW163_RS13960 | | muramoyltetrapeptide carboxypeptidase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.33 | RALBFv3_RS09645 | | RNA polymerase-binding protein DksA | 0.20 | RALBFv3_RS00630 | | muramoyltetrapeptide carboxypeptidase | — | — |
Not shown: 35 genomes with orthologs for PP_4693 only; 12 genomes with orthologs for PP_4799 only