Conservation of cofitness between PP_4129 and PP_4546 in Pseudomonas putida KT2440

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4129 NADH:ubiquinone oxidoreductase, membrane subunit L 1.0 PP_4546 ATP-dependent helicase HrpA 0.43 16
Pseudomonas sp. RS175 0.93 PFR28_02637 NADH-quinone oxidoreductase subunit L 0.85 PFR28_00739 hypothetical protein — —
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS18665 NADH-quinone oxidoreductase subunit L 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA low > 109
Pseudomonas fluorescens SBW25 0.91 PFLU_RS18665 NADH-quinone oxidoreductase subunit L 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA low > 109
Pseudomonas simiae WCS417 0.91 PS417_16625 NADH-quinone oxidoreductase subunit L 0.85 PS417_20575 ATP-dependent helicase HrpA — —
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_27790 NADH-quinone oxidoreductase subunit L 0.85 AO353_18225 ATP-dependent RNA helicase HrpA — —
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_2623 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.85 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) low > 87
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_22020 NADH-quinone oxidoreductase subunit L 0.85 AO356_04280 ATP-dependent RNA helicase HrpA — —
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_267 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.85 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) — —
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_4030 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.85 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_3207 NADH dehydrogenase subunit L 0.85 Psyr_3831 ATP-dependent helicase HrpA — —
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_3207 NADH dehydrogenase subunit L 0.85 Psyr_3831 ATP-dependent helicase HrpA — —
Pseudomonas sp. S08-1 0.76 OH686_00105 NADH-ubiquinone oxidoreductase chain L 0.80 OH686_05730 RNA helicase HrpA low > 80
Shewanella oneidensis MR-1 0.69 SO1011 nuoL NADH dehydrogenase I, L subunit (NCBI ptt file) 0.48 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1881 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) low > 78
Pectobacterium carotovorum WPP14 0.67 HER17_RS07175 NADH-quinone oxidoreductase subunit L 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA low > 75
Pantoea sp. MT58 0.67 IAI47_06410 NADH-quinone oxidoreductase subunit L 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA low > 76
Escherichia coli ECOR27 0.67 NOLOHH_14510 nuoL NADH-quinone oxidoreductase subunit L 0.47 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA — —
Erwinia tracheiphila SCR3 0.67 LU632_RS08015 nuoL NADH-quinone oxidoreductase subunit L 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA low > 74
Enterobacter sp. TBS_079 0.67 MPMX20_03208 NADH-quinone oxidoreductase subunit L 0.47 MPMX20_02189 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.67 EX28DRAFT_0332 proton-translocating NADH-quinone oxidoreductase, chain L 0.47 EX28DRAFT_1357 RNA helicase HrpA low > 76
Escherichia coli BL21 0.67 ECD_02203 NADH:ubiquinone oxidoreductase, membrane subunit L 0.47 ECD_01368 putative ATP-dependent helicase low > 60
Escherichia fergusonii Becca 0.67 EFB2_01581 NADH-quinone oxidoreductase subunit L 0.47 EFB2_02565 hypothetical protein low > 86
Escherichia coli Nissle 1917 0.67 ECOLIN_RS13235 NADH-quinone oxidoreductase subunit L 0.47 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA — —
Escherichia coli ECOR38 0.67 HEPCGN_22095 nuoL NADH-quinone oxidoreductase subunit L 0.47 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA low > 85
Escherichia coli ECRC101 0.67 OKFHMN_22890 nuoL NADH-quinone oxidoreductase subunit L 0.47 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC101 0.67 MCAODC_13930 nuoL NADH-quinone oxidoreductase subunit L 0.47 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01428 NADH-quinone oxidoreductase subunit L 0.47 OHPLBJKB_02301 hypothetical protein low > 73
Escherichia coli ECRC98 0.67 JDDGAC_26855 nuoL NADH-quinone oxidoreductase subunit L 0.47 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC99 0.67 KEDOAH_05305 nuoL NADH-quinone oxidoreductase subunit L 0.47 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC102 0.67 NIAGMN_20660 nuoL NADH-quinone oxidoreductase subunit L 0.47 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli ECRC62 0.67 BNILDI_13430 nuoL NADH-quinone oxidoreductase subunit L 0.47 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA — —
Escherichia coli BW25113 0.67 b2278 nuoL NADH dehydrogenase subunit L (NCBI) 0.47 b1413 hrpA ATP-dependent helicase (RefSeq) low > 76
Rahnella sp. WP5 0.67 EX31_RS19385 NADH-quinone oxidoreductase subunit L 0.46 EX31_RS06495 ATP-dependent RNA helicase HrpA low > 89
Serratia liquefaciens MT49 0.66 IAI46_17660 NADH-quinone oxidoreductase subunit L 0.48 IAI46_13330 ATP-dependent RNA helicase HrpA low > 86
Klebsiella michiganensis M5al 0.65 BWI76_RS20140 NADH-quinone oxidoreductase subunit L 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA low > 92
Dickeya dianthicola ME23 0.65 DZA65_RS14935 NADH-quinone oxidoreductase subunit L 0.47 DZA65_RS12800 ATP-dependent RNA helicase HrpA — —
Dickeya dadantii 3937 0.65 DDA3937_RS14285 NADH-quinone oxidoreductase subunit L 0.48 DDA3937_RS12270 ATP-dependent RNA helicase HrpA — —
Dickeya dianthicola 67-19 0.65 HGI48_RS14260 NADH-quinone oxidoreductase subunit L 0.47 HGI48_RS12360 ATP-dependent RNA helicase HrpA low > 71
Acinetobacter radioresistens SK82 0.53 MPMX26_02545 NADH-quinone oxidoreductase subunit L 0.37 MPMX26_02008 hypothetical protein — —
Variovorax sp. OAS795 0.28 ABID97_RS20440 NADH-quinone oxidoreductase subunit L 0.39 ABID97_RS16615 ATP-dependent RNA helicase HrpA — —

Not shown: 19 genomes with orthologs for PP_4129 only; 28 genomes with orthologs for PP_4546 only