Conservation of cofitness between PP_2160 and PP_4129 in Pseudomonas putida KT2440

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 1.0 PP_4129 NADH:ubiquinone oxidoreductase, membrane subunit L 0.36 15
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.90 PfGW456L13_2623 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) low > 87
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.88 Pf1N1B4_4030 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) 0.49 17
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_1907 GTP cyclohydrolase I 0.87 Psyr_3207 NADH dehydrogenase subunit L — —
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_1907 GTP cyclohydrolase I 0.87 Psyr_3207 NADH dehydrogenase subunit L — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.91 AO353_27790 NADH-quinone oxidoreductase subunit L — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.91 PFLU_RS18665 NADH-quinone oxidoreductase subunit L low > 109
Pseudomonas fluorescens SBW25 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.91 PFLU_RS18665 NADH-quinone oxidoreductase subunit L low > 109
Pseudomonas simiae WCS417 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.91 PS417_16625 NADH-quinone oxidoreductase subunit L — —
Pseudomonas sp. RS175 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.93 PFR28_02637 NADH-quinone oxidoreductase subunit L — —
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.89 Pf6N2E2_267 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) — —
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.90 AO356_22020 NADH-quinone oxidoreductase subunit L — —
Pseudomonas sp. S08-1 0.75 OH686_22700 queuine synthase 0.76 OH686_00105 NADH-ubiquinone oxidoreductase chain L low > 80
Serratia liquefaciens MT49 0.50 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.66 IAI46_17660 NADH-quinone oxidoreductase subunit L low > 86
Rahnella sp. WP5 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 EX31_RS19385 NADH-quinone oxidoreductase subunit L low > 89
Escherichia coli ECRC98 0.49 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 JDDGAC_26855 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli ECRC101 0.49 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 MCAODC_13930 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli ECRC102 0.49 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 NIAGMN_20660 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli ECRC99 0.49 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 KEDOAH_05305 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli ECRC101 0.49 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 OKFHMN_22890 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia fergusonii Becca 0.49 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.67 EFB2_01581 NADH-quinone oxidoreductase subunit L low > 86
Escherichia coli Nissle 1917 0.49 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 ECOLIN_RS13235 NADH-quinone oxidoreductase subunit L low > 52
Escherichia coli ECOR38 0.49 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 HEPCGN_22095 nuoL NADH-quinone oxidoreductase subunit L low > 85
Escherichia coli ECOR27 0.49 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 NOLOHH_14510 nuoL NADH-quinone oxidoreductase subunit L low > 57
Escherichia coli ECRC62 0.49 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 BNILDI_13430 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli BL21 0.49 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) 0.67 ECD_02203 NADH:ubiquinone oxidoreductase, membrane subunit L low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.67 OHPLBJKB_01428 NADH-quinone oxidoreductase subunit L low > 73
Escherichia coli BW25113 0.48 b2794 yqcD hypothetical protein (NCBI) 0.67 b2278 nuoL NADH dehydrogenase subunit L (NCBI) low > 76
Shewanella oneidensis MR-1 0.48 SO1608 conserved hypothetical protein (NCBI ptt file) 0.69 SO1011 nuoL NADH dehydrogenase I, L subunit (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase 0.67 EX28DRAFT_0332 proton-translocating NADH-quinone oxidoreductase, chain L low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.67 GFF1881 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) low > 78
Enterobacter sp. TBS_079 0.48 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.67 MPMX20_03208 NADH-quinone oxidoreductase subunit L low > 85
Pantoea sp. MT58 0.48 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 IAI47_06410 NADH-quinone oxidoreductase subunit L low > 76
Erwinia tracheiphila SCR3 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 LU632_RS08015 nuoL NADH-quinone oxidoreductase subunit L low > 74
Klebsiella michiganensis M5al 0.47 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.65 BWI76_RS20140 NADH-quinone oxidoreductase subunit L low > 92
Dickeya dadantii 3937 0.47 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.65 DDA3937_RS14285 NADH-quinone oxidoreductase subunit L — —
Dickeya dianthicola 67-19 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.65 HGI48_RS14260 NADH-quinone oxidoreductase subunit L low > 71
Dickeya dianthicola ME23 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.65 DZA65_RS14935 NADH-quinone oxidoreductase subunit L — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 HER17_RS07175 NADH-quinone oxidoreductase subunit L low > 75
Variovorax sp. OAS795 0.43 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.28 ABID97_RS20440 NADH-quinone oxidoreductase subunit L — —
Acinetobacter radioresistens SK82 0.38 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.53 MPMX26_02545 NADH-quinone oxidoreductase subunit L — —

Not shown: 30 genomes with orthologs for PP_2160 only; 19 genomes with orthologs for PP_4129 only