Conservation of cofitness between PP_4546 and PP_4121 in Pseudomonas putida KT2440

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4546 ATP-dependent helicase HrpA 1.0 PP_4121 NADH-quinone oxidoreductase subunit C/D 0.48 5
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.95 Psyr_3199 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.95 Psyr_3199 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C low > 86
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.93 Pf6N2E2_275 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) — —
Pseudomonas simiae WCS417 0.85 PS417_20575 ATP-dependent helicase HrpA 0.91 PS417_16585 NADH:ubiquinone oxidoreductase — —
Pseudomonas sp. RS175 0.85 PFR28_00739 hypothetical protein 0.92 PFR28_02629 NADH-quinone oxidoreductase subunit C/D — —
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_18225 ATP-dependent RNA helicase HrpA 0.92 AO353_27750 NADH:ubiquinone oxidoreductase — —
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_04280 ATP-dependent RNA helicase HrpA 0.93 AO356_22060 NADH:ubiquinone oxidoreductase — —
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.93 PfGW456L13_2631 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) low > 87
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.91 PFLU_RS18625 NADH-quinone oxidoreductase subunit C/D low > 109
Pseudomonas fluorescens SBW25 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.91 PFLU_RS18625 NADH-quinone oxidoreductase subunit C/D low > 109
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.92 Pf1N1B4_4039 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) low > 87
Pseudomonas sp. S08-1 0.80 OH686_05730 RNA helicase HrpA 0.91 OH686_00145 NADH-ubiquinone oxidoreductase chain C / NADH-ubiquinone oxidoreductase chain D low > 80
Shewanella oneidensis MR-1 0.48 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.77 SO1019 nuoCD NADH dehydrogenase I, C/D subunits (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.48 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.78 DDA3937_RS14325 NADH-quinone oxidoreductase subunit C/D — —
Serratia liquefaciens MT49 0.48 IAI46_13330 ATP-dependent RNA helicase HrpA 0.79 IAI46_17700 NADH-quinone oxidoreductase subunit C/D low > 86
Pectobacterium carotovorum WPP14 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.78 HER17_RS07135 NADH-quinone oxidoreductase subunit C/D low > 75
Dickeya dianthicola ME23 0.47 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.78 DZA65_RS14975 NADH-quinone oxidoreductase subunit C/D — —
Dickeya dianthicola 67-19 0.47 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.78 HGI48_RS14300 NADH-quinone oxidoreductase subunit C/D 0.45 32
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.78 GFF1889 NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) low > 78
Escherichia fergusonii Becca 0.47 EFB2_02565 hypothetical protein 0.78 EFB2_01573 NADH-quinone oxidoreductase subunit C/D low > 86
Escherichia coli Nissle 1917 0.47 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.78 ECOLIN_RS13275 NADH-quinone oxidoreductase subunit C/D — —
Escherichia coli ECRC101 0.47 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.78 OKFHMN_22850 nuoC NADH-quinone oxidoreductase subunit C/D — —
Escherichia coli ECRC101 0.47 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.78 MCAODC_13890 nuoC NADH-quinone oxidoreductase subunit C/D — —
Escherichia coli ECRC102 0.47 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.78 NIAGMN_20620 nuoC NADH-quinone oxidoreductase subunit C/D — —
Escherichia coli ECRC99 0.47 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.78 KEDOAH_05345 nuoC NADH-quinone oxidoreductase subunit C/D — —
Escherichia coli ECRC98 0.47 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.78 JDDGAC_26815 nuoC NADH-quinone oxidoreductase subunit C/D — —
Escherichia coli BL21 0.47 ECD_01368 putative ATP-dependent helicase 0.78 ECD_02211 NADH:ubiquinone oxidoreductase, fused CD subunit low > 60
Escherichia coli ECOR38 0.47 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.78 HEPCGN_22055 nuoC NADH-quinone oxidoreductase subunit C/D low > 85
Escherichia coli ECRC62 0.47 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.78 BNILDI_13390 nuoC NADH-quinone oxidoreductase subunit C/D — —
Escherichia coli ECOR27 0.47 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.78 NOLOHH_14470 nuoC NADH-quinone oxidoreductase subunit C/D — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_1357 RNA helicase HrpA 0.78 EX28DRAFT_0323 NADH (or F420H2) dehydrogenase, subunit C low > 76
Escherichia coli BW25113 0.47 b1413 hrpA ATP-dependent helicase (RefSeq) 0.78 b2286 nuoC NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_02301 hypothetical protein 0.78 OHPLBJKB_01420 NADH-quinone oxidoreductase subunit C/D low > 73
Enterobacter sp. TBS_079 0.47 MPMX20_02189 hypothetical protein 0.78 MPMX20_03216 NADH-quinone oxidoreductase subunit C/D low > 85
Klebsiella michiganensis M5al 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.78 BWI76_RS20180 NADH-quinone oxidoreductase subunit C/D low > 92
Pantoea sp. MT58 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA 0.78 IAI47_06370 NADH-quinone oxidoreductase subunit C/D 0.23 51
Rahnella sp. WP5 0.46 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.77 EX31_RS19425 NADH-quinone oxidoreductase subunit C/D low > 89
Erwinia tracheiphila SCR3 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.77 LU632_RS07975 nuoC NADH-quinone oxidoreductase subunit C/D low > 74
Acinetobacter radioresistens SK82 0.37 MPMX26_02008 hypothetical protein 0.68 MPMX26_02553 NADH-quinone oxidoreductase subunit C/D — —

Not shown: 29 genomes with orthologs for PP_4546 only; 7 genomes with orthologs for PP_4121 only