Conservation of cofitness between PP_4546 and PP_4120 in Pseudomonas putida KT2440

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4546 ATP-dependent helicase HrpA 1.0 PP_4120 NADH-quinone oxidoreductase subunit B 0.43 14
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.95 Psyr_3198 NADH dehydrogenase subunit B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_3831 ATP-dependent helicase HrpA 0.95 Psyr_3198 NADH dehydrogenase subunit B — —
Pseudomonas fluorescens FW300-N2E2 0.85 Pf6N2E2_2694 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.95 Pf6N2E2_276 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) — —
Pseudomonas sp. RS175 0.85 PFR28_00739 hypothetical protein 0.93 PFR28_02628 NADH-quinone oxidoreductase subunit B — —
Pseudomonas simiae WCS417 0.85 PS417_20575 ATP-dependent helicase HrpA 0.95 PS417_16580 NADH dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_18225 ATP-dependent RNA helicase HrpA 0.95 AO353_27745 NADH dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_04280 ATP-dependent RNA helicase HrpA 0.95 AO356_22065 NADH dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_4467 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.95 PfGW456L13_2632 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) low > 87
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.95 PFLU_RS18620 NADH-quinone oxidoreductase subunit B low > 109
Pseudomonas fluorescens SBW25 0.85 PFLU_RS22265 ATP-dependent RNA helicase HrpA 0.95 PFLU_RS18620 NADH-quinone oxidoreductase subunit B low > 109
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_3388 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.94 Pf1N1B4_4040 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) low > 87
Pseudomonas sp. S08-1 0.80 OH686_05730 RNA helicase HrpA 0.96 OH686_00150 NADH-ubiquinone oxidoreductase chain B low > 80
Shewanella oneidensis MR-1 0.48 SO2229 hrpA ATP-dependent helicase HrpA (NCBI ptt file) 0.81 SO1020 nuoB NADH dehydrogenase I, B subunit (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.48 IAI46_13330 ATP-dependent RNA helicase HrpA 0.80 IAI46_17705 NADH-quinone oxidoreductase subunit B low > 86
Dickeya dadantii 3937 0.48 DDA3937_RS12270 ATP-dependent RNA helicase HrpA 0.78 DDA3937_RS14330 NADH-quinone oxidoreductase subunit B — —
Pectobacterium carotovorum WPP14 0.47 HER17_RS09660 ATP-dependent RNA helicase HrpA 0.80 HER17_RS07130 NADH-quinone oxidoreductase subunit B low > 75
Dickeya dianthicola ME23 0.47 DZA65_RS12800 ATP-dependent RNA helicase HrpA 0.78 DZA65_RS14980 NADH-quinone oxidoreductase subunit B — —
Dickeya dianthicola 67-19 0.47 HGI48_RS12360 ATP-dependent RNA helicase HrpA 0.78 HGI48_RS14305 NADH-quinone oxidoreductase subunit B low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2632 ATP-dependent RNA helicase HrpA (EC 3.6.4.13) 0.79 GFF1890 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) low > 78
Escherichia coli Nissle 1917 0.47 ECOLIN_RS08180 ATP-dependent RNA helicase HrpA 0.79 ECOLIN_RS13280 NADH-quinone oxidoreductase subunit NuoB — —
Escherichia fergusonii Becca 0.47 EFB2_02565 hypothetical protein 0.79 EFB2_01572 NADH-quinone oxidoreductase subunit B low > 86
Escherichia coli ECRC99 0.47 KEDOAH_26710 hrpA ATP-dependent RNA helicase HrpA 0.79 KEDOAH_05350 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECRC102 0.47 NIAGMN_25865 hrpA ATP-dependent RNA helicase HrpA 0.79 NIAGMN_20615 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECRC101 0.47 MCAODC_16205 hrpA ATP-dependent RNA helicase HrpA 0.79 MCAODC_13885 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECRC98 0.47 JDDGAC_04220 hrpA ATP-dependent RNA helicase HrpA 0.79 JDDGAC_26810 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECRC101 0.47 OKFHMN_01730 hrpA ATP-dependent RNA helicase HrpA 0.79 OKFHMN_22845 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli BL21 0.47 ECD_01368 putative ATP-dependent helicase 0.79 ECD_02212 NADH:ubiquinone oxidoreductase, chain B low > 60
Escherichia coli ECOR38 0.47 HEPCGN_26110 hrpA ATP-dependent RNA helicase HrpA 0.79 HEPCGN_22050 nuoB NADH-quinone oxidoreductase subunit NuoB low > 85
Escherichia coli ECRC62 0.47 BNILDI_17845 hrpA ATP-dependent RNA helicase HrpA 0.79 BNILDI_13385 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECOR27 0.47 NOLOHH_19390 hrpA ATP-dependent RNA helicase HrpA 0.79 NOLOHH_14465 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Enterobacter asburiae PDN3 0.47 EX28DRAFT_1357 RNA helicase HrpA 0.80 EX28DRAFT_0322 NADH-quinone oxidoreductase, B subunit low > 76
Escherichia coli BW25113 0.47 b1413 hrpA ATP-dependent helicase (RefSeq) 0.79 b2287 nuoB NADH dehydrogenase subunit B (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_02301 hypothetical protein 0.79 OHPLBJKB_01419 NADH-quinone oxidoreductase subunit B low > 73
Enterobacter sp. TBS_079 0.47 MPMX20_02189 hypothetical protein 0.80 MPMX20_03217 NADH-quinone oxidoreductase subunit B low > 85
Klebsiella michiganensis M5al 0.46 BWI76_RS13165 ATP-dependent RNA helicase HrpA 0.80 BWI76_RS20185 NADH-quinone oxidoreductase subunit B — —
Pantoea sp. MT58 0.46 IAI47_09520 ATP-dependent RNA helicase HrpA 0.80 IAI47_06365 NADH-quinone oxidoreductase subunit B 0.22 59
Rahnella sp. WP5 0.46 EX31_RS06495 ATP-dependent RNA helicase HrpA 0.81 EX31_RS19430 NADH-quinone oxidoreductase subunit B low > 89
Erwinia tracheiphila SCR3 0.45 LU632_RS12630 hrpA ATP-dependent RNA helicase HrpA 0.78 LU632_RS07970 NADH-quinone oxidoreductase subunit B low > 74
Acinetobacter radioresistens SK82 0.37 MPMX26_02008 hypothetical protein 0.69 MPMX26_02554 NADH-quinone oxidoreductase subunit B — —

Not shown: 29 genomes with orthologs for PP_4546 only; 3 genomes with orthologs for PP_4120 only