Conservation of cofitness between PP_2160 and PP_4120 in Pseudomonas putida KT2440

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 1.0 PP_4120 NADH-quinone oxidoreductase subunit B 0.36 12
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.95 PfGW456L13_2632 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) low > 87
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.94 Pf1N1B4_4040 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) 0.47 22
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_1907 GTP cyclohydrolase I 0.95 Psyr_3198 NADH dehydrogenase subunit B low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_1907 GTP cyclohydrolase I 0.95 Psyr_3198 NADH dehydrogenase subunit B — —
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.95 AO353_27745 NADH dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.95 PFLU_RS18620 NADH-quinone oxidoreductase subunit B low > 109
Pseudomonas fluorescens SBW25 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.95 PFLU_RS18620 NADH-quinone oxidoreductase subunit B low > 109
Pseudomonas simiae WCS417 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.95 PS417_16580 NADH dehydrogenase — —
Pseudomonas sp. RS175 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.93 PFR28_02628 NADH-quinone oxidoreductase subunit B — —
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.95 AO356_22065 NADH dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.95 Pf6N2E2_276 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) — —
Pseudomonas sp. S08-1 0.75 OH686_22700 queuine synthase 0.96 OH686_00150 NADH-ubiquinone oxidoreductase chain B low > 80
Serratia liquefaciens MT49 0.50 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.80 IAI46_17705 NADH-quinone oxidoreductase subunit B low > 86
Rahnella sp. WP5 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.81 EX31_RS19430 NADH-quinone oxidoreductase subunit B low > 89
Escherichia coli ECRC98 0.49 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 JDDGAC_26810 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECRC99 0.49 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 KEDOAH_05350 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECRC101 0.49 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 OKFHMN_22845 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECRC102 0.49 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 NIAGMN_20615 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECRC101 0.49 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 MCAODC_13885 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli Nissle 1917 0.49 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 ECOLIN_RS13280 NADH-quinone oxidoreductase subunit NuoB low > 52
Escherichia coli ECOR38 0.49 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 HEPCGN_22050 nuoB NADH-quinone oxidoreductase subunit NuoB low > 85
Escherichia fergusonii Becca 0.49 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.79 EFB2_01572 NADH-quinone oxidoreductase subunit B low > 86
Escherichia coli ECRC62 0.49 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 BNILDI_13385 nuoB NADH-quinone oxidoreductase subunit NuoB — —
Escherichia coli ECOR27 0.49 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.79 NOLOHH_14465 nuoB NADH-quinone oxidoreductase subunit NuoB low > 57
Escherichia coli BL21 0.49 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) 0.79 ECD_02212 NADH:ubiquinone oxidoreductase, chain B low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.79 OHPLBJKB_01419 NADH-quinone oxidoreductase subunit B low > 73
Escherichia coli BW25113 0.48 b2794 yqcD hypothetical protein (NCBI) 0.79 b2287 nuoB NADH dehydrogenase subunit B (NCBI) low > 76
Shewanella oneidensis MR-1 0.48 SO1608 conserved hypothetical protein (NCBI ptt file) 0.81 SO1020 nuoB NADH dehydrogenase I, B subunit (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.48 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase 0.80 EX28DRAFT_0322 NADH-quinone oxidoreductase, B subunit low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.79 GFF1890 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) 0.29 72
Enterobacter sp. TBS_079 0.48 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.80 MPMX20_03217 NADH-quinone oxidoreductase subunit B low > 85
Pantoea sp. MT58 0.48 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.80 IAI47_06365 NADH-quinone oxidoreductase subunit B low > 76
Erwinia tracheiphila SCR3 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.78 LU632_RS07970 NADH-quinone oxidoreductase subunit B low > 74
Klebsiella michiganensis M5al 0.47 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.80 BWI76_RS20185 NADH-quinone oxidoreductase subunit B — —
Dickeya dadantii 3937 0.47 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.78 DDA3937_RS14330 NADH-quinone oxidoreductase subunit B — —
Dickeya dianthicola 67-19 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.78 HGI48_RS14305 NADH-quinone oxidoreductase subunit B low > 71
Dickeya dianthicola ME23 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.78 DZA65_RS14980 NADH-quinone oxidoreductase subunit B — —
Pectobacterium carotovorum WPP14 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.80 HER17_RS07130 NADH-quinone oxidoreductase subunit B low > 75
Acinetobacter radioresistens SK82 0.38 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.69 MPMX26_02554 NADH-quinone oxidoreductase subunit B — —

Not shown: 31 genomes with orthologs for PP_2160 only; 3 genomes with orthologs for PP_4120 only