Conservation of cofitness between PP_1476 and PP_2931 in Pseudomonas putida KT2440

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1476 conserved protein of unknown function 1.0 PP_2931 conserved protein of unknown function 0.17 6
Ralstonia solanacearum UW163 0.36 UW163_RS00415 hypothetical protein 0.20 UW163_RS17980 DNA-binding protein — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS13150 hypothetical protein 0.20 RALBFv3_RS16625 DNA-binding protein low > 76
Ralstonia solanacearum PSI07 0.36 RPSI07_RS20065 hypothetical protein 0.20 RPSI07_RS06825 DNA-binding protein low > 81
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS15250 hypothetical protein 0.17 RR42_RS11120 DNA-binding protein low > 128
Ralstonia solanacearum GMI1000 0.35 RS_RS03945 hypothetical protein 0.20 RS_RS24435 DNA-binding protein low > 80
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS09225 YaeQ family protein 0.18 ABZR87_RS17665 PAS domain-containing protein low > 80
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS04930 hypothetical protein 0.18 HSERO_RS01425 DNA-binding protein low > 78
Serratia liquefaciens MT49 0.33 IAI46_20115 YaeQ family protein 0.18 IAI46_10330 PAS domain-containing protein low > 86
Dickeya dianthicola 67-19 0.33 HGI48_RS05220 YaeQ family protein 0.14 HGI48_RS19440 transcriptional regulator low > 71
Dickeya dadantii 3937 0.33 DDA3937_RS05220 YaeQ family protein 0.17 DDA3937_RS08080 PAS domain-containing protein low > 74
Dickeya dianthicola ME23 0.33 DZA65_RS05560 YaeQ family protein 0.14 DZA65_RS20560 transcriptional regulator low > 75
Pectobacterium carotovorum WPP14 0.33 HER17_RS16230 YaeQ family protein 0.16 HER17_RS09825 helix-turn-helix transcriptional regulator low > 75
Rahnella sp. WP5 0.33 EX31_RS12920 YaeQ family protein 0.14 EX31_RS04470 transcriptional regulator low > 89
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS29620 YaeQ family protein 0.18 QEN71_RS18565 PAS domain-containing protein low > 153
Shewanella oneidensis MR-1 0.32 SO3107 conserved hypothetical protein (NCBI ptt file) 0.17 SO1402 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.32 Shewana3_1442 YaeQ family protein (RefSeq) 0.17 Shewana3_2973 YheO domain-containing protein (RefSeq) — —
Escherichia coli ECOR38 0.29 HEPCGN_08055 yaeQ Uncharacterized protein YaeQ 0.13 HEPCGN_16130 yheO Uncharacterized protein YheO low > 85
Escherichia coli Nissle 1917 0.29 ECOLIN_RS01035 YaeQ family protein 0.13 ECOLIN_RS19165 transcriptional regulator low > 52
Escherichia fergusonii Becca 0.29 EFB2_03853 putative protein YaeQ 0.13 EFB2_00477 Transcriptional regulator DauR low > 86
Escherichia coli ECRC101 0.29 OKFHMN_10100 yaeQ Uncharacterized protein YaeQ 0.13 OKFHMN_17300 yheO Uncharacterized protein YheO — —
Escherichia coli ECRC101 0.29 MCAODC_00615 yaeQ Uncharacterized protein YaeQ 0.13 MCAODC_07830 yheO Uncharacterized protein YheO — —
Escherichia coli ECRC99 0.29 KEDOAH_18055 yaeQ Uncharacterized protein YaeQ 0.13 KEDOAH_10840 yheO Uncharacterized protein YheO — —
Escherichia coli ECRC98 0.29 JDDGAC_13695 yaeQ Uncharacterized protein YaeQ 0.13 JDDGAC_20930 yheO Uncharacterized protein YheO — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF30 YaeQ protein 0.14 GFF3726 YheO-like PAS domain low > 78
Enterobacter asburiae PDN3 0.29 EX28DRAFT_3779 Uncharacterized protein conserved in bacteria 0.14 EX28DRAFT_4184 Uncharacterized protein conserved in bacteria low > 76
Escherichia coli BL21 0.29 ECD_00189 PDDEXK superfamily protein 0.13 ECD_03197 putative PAS domain-containing DNA-binding transcriptional regulator low > 60
Erwinia tracheiphila SCR3 0.29 LU632_RS19855 YaeQ family protein 0.13 LU632_RS22710 transcriptional regulator 0.39 47
Enterobacter sp. TBS_079 0.29 MPMX20_00875 putative protein YaeQ 0.14 MPMX20_04239 Transcriptional regulator DauR low > 85
Escherichia coli BW25113 0.29 b0190 yaeQ hypothetical protein (NCBI) 0.13 b3346 yheO orf, hypothetical protein (VIMSS) low > 76
Escherichia coli ECOR27 0.28 NOLOHH_02445 yaeQ Uncharacterized protein YaeQ 0.13 NOLOHH_09100 yheO Uncharacterized protein YheO low > 57
Escherichia coli ECRC62 0.28 BNILDI_09225 yaeQ Uncharacterized protein YaeQ 0.13 BNILDI_02420 yheO Uncharacterized protein YheO — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_03472 putative protein YaeQ 0.13 OHPLBJKB_00357 Transcriptional regulator DauR low > 73
Klebsiella michiganensis M5al 0.28 BWI76_RS05325 hypothetical protein 0.13 BWI76_RS25905 hypothetical protein low > 92
Variovorax sp. SCN45 0.26 GFF5428 YaeQ protein 0.15 GFF2493 YheO-like PAS domain low > 127
Escherichia coli ECRC102 0.25 NIAGMN_07950 yaeQ Uncharacterized protein YaeQ 0.13 NIAGMN_15070 yheO Uncharacterized protein YheO — —
Acidovorax sp. GW101-3H11 0.25 Ac3H11_1233 YaeQ protein 0.16 Ac3H11_38 YheO-like PAS domain low > 79

Not shown: 29 genomes with orthologs for PP_1476 only; 3 genomes with orthologs for PP_2931 only