Conservation of cofitness between PP_1230 and PP_2025 in Pseudomonas putida KT2440

37 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1230 conserved exported protein of unknown function 1.0 PP_2025 Exonuclease SbcD 0.22 2
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_11370 hypothetical protein 0.78 AO353_23680 exonuclease SbcD low > 101
Pseudomonas fluorescens SBW25 0.38 PFLU_RS00730 YdgA family protein 0.78 PFLU_RS17135 exonuclease subunit SbcD low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS00730 YdgA family protein 0.78 PFLU_RS17135 exonuclease subunit SbcD low > 109
Pseudomonas simiae WCS417 0.38 PS417_00735 hypothetical protein 0.78 PS417_15115 exonuclease SbcD low > 88
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_10805 hypothetical protein 0.78 AO356_24630 exonuclease SbcD low > 104
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_502 GTP-binding protein 0.78 PfGW456L13_3307 Exonuclease SbcD low > 87
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_4033 GTP-binding protein 0.79 Pf6N2E2_619 Exonuclease SbcD low > 103
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1746 GTP-binding protein 0.78 Pf1N1B4_4633 Exonuclease SbcD — —
Pseudomonas sp. RS175 0.36 PFR28_04737 Protein YdgA 0.79 PFR28_01589 Nuclease SbcCD subunit D low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.31 Psyr_5005 protein of unknown function DUF945 0.77 Psyr_1715 Exodeoxyribonuclease I subunit D low > 86
Pseudomonas syringae pv. syringae B728a 0.31 Psyr_5005 protein of unknown function DUF945 0.77 Psyr_1715 Exodeoxyribonuclease I subunit D low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.18 GFF1809 Putative GTP-binding protein YdgA 0.20 GFF4294 Exonuclease SbcD low > 78
Escherichia coli Nissle 1917 0.18 ECOLIN_RS09010 YdgA family protein 0.21 ECOLIN_RS02405 exonuclease subunit SbcD low > 52
Escherichia fergusonii Becca 0.18 EFB2_02378 Protein YdgA 0.21 EFB2_03659 Nuclease SbcCD subunit D low > 86
Escherichia coli BW25113 0.17 b1614 ydgA hypothetical protein (NCBI) 0.21 b0398 sbcD exonuclease, dsDNA, ATP-dependent (NCBI) low > 76
Escherichia coli ECOR38 0.17 HEPCGN_06010 ydgA Protein YdgA 0.22 HEPCGN_07190 sbcD exonuclease subunit SbcD low > 85
Escherichia coli BL21 0.17 ECD_01583 DUF945 family protein 0.21 ECD_00346 exonuclease, dsDNA, ATP-dependent — —
Escherichia coli ECRC98 0.17 JDDGAC_02225 ydgA Protein YdgA 0.21 JDDGAC_12205 sbcD exonuclease subunit SbcD — —
Escherichia coli ECRC101 0.17 OKFHMN_27635 ydgA Protein YdgA 0.21 OKFHMN_08550 sbcD exonuclease subunit SbcD — —
Escherichia coli ECRC99 0.17 KEDOAH_00470 ydgA Protein YdgA 0.21 KEDOAH_19415 sbcD exonuclease subunit SbcD — —
Escherichia coli ECRC101 0.17 MCAODC_17775 ydgA Protein YdgA 0.21 MCAODC_27775 sbcD exonuclease subunit SbcD — —
Escherichia coli ECRC102 0.17 NIAGMN_00440 ydgA Protein YdgA 0.21 NIAGMN_06605 sbcD exonuclease subunit SbcD — —
Escherichia coli ECRC62 0.17 BNILDI_16930 ydgA Protein YdgA 0.21 BNILDI_22895 sbcD exonuclease subunit SbcD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.17 OHPLBJKB_02112 Protein YdgA 0.21 OHPLBJKB_03278 Nuclease SbcCD subunit D low > 73
Pseudomonas stutzeri RCH2 0.17 Psest_0041 Uncharacterized protein conserved in bacteria 0.67 Psest_3539 exonuclease SbcD low > 67
Escherichia coli ECOR27 0.17 NOLOHH_18140 ydgA Protein YdgA 0.21 NOLOHH_01480 sbcD exonuclease subunit SbcD — —
Pantoea sp. MT58 0.17 IAI47_10345 YdgA family protein 0.22 IAI47_14860 exonuclease subunit SbcD low > 76
Klebsiella michiganensis M5al 0.16 BWI76_RS16285 hypothetical protein 0.21 BWI76_RS06225 exonuclease sbcCD subunit D low > 92
Enterobacter sp. TBS_079 0.16 MPMX20_02019 Protein YdgA 0.20 MPMX20_00985 Nuclease SbcCD subunit D low > 85
Enterobacter asburiae PDN3 0.16 EX28DRAFT_1611 Uncharacterized protein conserved in bacteria 0.20 EX28DRAFT_2576 Exodeoxyribonuclease I subunit D (EC 3.1.11.1) low > 76
Serratia liquefaciens MT49 0.15 IAI46_11640 YdgA family protein 0.21 IAI46_04770 exonuclease subunit SbcD low > 86
Erwinia tracheiphila SCR3 0.15 LU632_RS12340 YdgA family protein 0.24 LU632_RS18930 sbcD exonuclease subunit SbcD low > 74
Rahnella sp. WP5 0.14 EX31_RS06975 YdgA family protein 0.23 EX31_RS22035 exonuclease subunit SbcD low > 89
Pectobacterium carotovorum WPP14 0.13 HER17_RS10765 YdgA family protein 0.22 HER17_RS16045 exonuclease subunit SbcD low > 75
Dickeya dadantii 3937 0.11 DDA3937_RS10645 YdgA family protein 0.22 DDA3937_RS05420 exonuclease subunit SbcD low > 74
Dickeya dianthicola ME23 0.11 DZA65_RS11115 YdgA family protein 0.22 DZA65_RS05805 exonuclease subunit SbcD low > 75
Dickeya dianthicola 67-19 0.10 HGI48_RS10645 YdgA family protein 0.22 HGI48_RS05480 exonuclease subunit SbcD low > 71

Not shown: 2 genomes with orthologs for PP_1230 only; 13 genomes with orthologs for PP_2025 only