Conservation of cofitness between PP_2025 and PP_1824 in Pseudomonas putida KT2440

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_2025 Exonuclease SbcD 1.0 PP_1824 Smr domain protein 0.29 3
Pseudomonas fluorescens FW300-N2E2 0.79 Pf6N2E2_619 Exonuclease SbcD 0.87 Pf6N2E2_5816 Smr domain protein low > 103
Pseudomonas sp. RS175 0.79 PFR28_01589 Nuclease SbcCD subunit D 0.85 PFR28_03132 putative DNA endonuclease SmrA low > 88
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_24630 exonuclease SbcD 0.87 AO356_19510 DNA mismatch repair protein MutS — —
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_23680 exonuclease SbcD 0.86 AO353_02280 DNA mismatch repair protein MutS low > 101
Pseudomonas fluorescens GW456-L13 0.78 PfGW456L13_3307 Exonuclease SbcD 0.86 PfGW456L13_4172 Smr domain protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_4633 Exonuclease SbcD 0.86 Pf1N1B4_3774 Smr domain protein — —
Pseudomonas fluorescens SBW25-INTG 0.78 PFLU_RS17135 exonuclease subunit SbcD 0.86 PFLU_RS21310 Smr/MutS family protein low > 109
Pseudomonas fluorescens SBW25 0.78 PFLU_RS17135 exonuclease subunit SbcD 0.86 PFLU_RS21310 Smr/MutS family protein low > 109
Pseudomonas simiae WCS417 0.78 PS417_15115 exonuclease SbcD 0.84 PS417_19345 DNA mismatch repair protein MutS — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.77 Psyr_1715 Exodeoxyribonuclease I subunit D 0.81 Psyr_1847 Smr protein/MutS2 C-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.77 Psyr_1715 Exodeoxyribonuclease I subunit D 0.81 Psyr_1847 Smr protein/MutS2 C-terminal — —
Pseudomonas stutzeri RCH2 0.67 Psest_3539 exonuclease SbcD 0.83 Psest_1993 Uncharacterized protein conserved in bacteria low > 67
Erwinia tracheiphila SCR3 0.24 LU632_RS18930 sbcD exonuclease subunit SbcD 0.18 LU632_RS07765 smrB endonuclease SmrB low > 74
Alteromonas macleodii MIT1002 0.24 MIT1002_00897 Nuclease SbcCD subunit D 0.26 MIT1002_01029 putative DNA endonuclease SmrA low > 70
Rahnella sp. WP5 0.23 EX31_RS22035 exonuclease subunit SbcD 0.24 EX31_RS07180 DNA endonuclease SmrA low > 89
Pectobacterium carotovorum WPP14 0.22 HER17_RS16045 exonuclease subunit SbcD 0.21 HER17_RS06925 endonuclease SmrB low > 75
Dickeya dadantii 3937 0.22 DDA3937_RS05420 exonuclease subunit SbcD 0.23 DDA3937_RS12085 DNA endonuclease SmrA low > 74
Dickeya dianthicola ME23 0.22 DZA65_RS05805 exonuclease subunit SbcD 0.23 DZA65_RS12625 DNA endonuclease SmrA low > 75
Escherichia coli ECOR38 0.22 HEPCGN_07190 sbcD exonuclease subunit SbcD 0.21 HEPCGN_25970 smrA DNA endonuclease SmrA low > 85
Dickeya dianthicola 67-19 0.22 HGI48_RS05480 exonuclease subunit SbcD 0.18 HGI48_RS14540 endonuclease SmrB low > 71
Escherichia coli Nissle 1917 0.21 ECOLIN_RS02405 exonuclease subunit SbcD 0.22 ECOLIN_RS08040 DNA endonuclease SmrA low > 52
Escherichia coli ECRC101 0.21 MCAODC_27775 sbcD exonuclease subunit SbcD 0.21 MCAODC_16065 smrA DNA endonuclease SmrA — —
Klebsiella michiganensis M5al 0.21 BWI76_RS06225 exonuclease sbcCD subunit D 0.22 BWI76_RS16155 hypothetical protein — —
Escherichia coli BL21 0.21 ECD_00346 exonuclease, dsDNA, ATP-dependent 0.21 ECD_01317 DNA endonuclease low > 60
Escherichia coli ECRC98 0.21 JDDGAC_12205 sbcD exonuclease subunit SbcD 0.21 JDDGAC_04750 smrA DNA endonuclease SmrA — —
Escherichia fergusonii Becca 0.21 EFB2_03659 Nuclease SbcCD subunit D 0.21 EFB2_02588 putative DNA endonuclease SmrA low > 86
Escherichia coli ECRC62 0.21 BNILDI_22895 sbcD exonuclease subunit SbcD 0.21 BNILDI_18055 smrA DNA endonuclease SmrA — —
Escherichia coli ECOR27 0.21 NOLOHH_01480 sbcD exonuclease subunit SbcD 0.21 NOLOHH_19905 smrA DNA endonuclease SmrA — —
Escherichia coli ECRC102 0.21 NIAGMN_06605 sbcD exonuclease subunit SbcD 0.21 NIAGMN_26360 smrA DNA endonuclease SmrA — —
Escherichia coli ECRC101 0.21 OKFHMN_08550 sbcD exonuclease subunit SbcD 0.21 OKFHMN_02190 smrA DNA endonuclease SmrA — —
Escherichia coli ECRC99 0.21 KEDOAH_19415 sbcD exonuclease subunit SbcD 0.21 KEDOAH_26565 smrA DNA endonuclease SmrA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_03278 Nuclease SbcCD subunit D 0.21 OHPLBJKB_02342 putative DNA endonuclease SmrA low > 73
Escherichia coli BW25113 0.21 b0398 sbcD exonuclease, dsDNA, ATP-dependent (NCBI) 0.21 b1340 ydaL hypothetical protein (NCBI) — —
Serratia liquefaciens MT49 0.21 IAI46_04770 exonuclease subunit SbcD 0.22 IAI46_19830 DNA endonuclease SmrA low > 86
Enterobacter asburiae PDN3 0.20 EX28DRAFT_2576 Exodeoxyribonuclease I subunit D (EC 3.1.11.1) 0.21 EX28DRAFT_1533 Uncharacterized protein conserved in bacteria low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF4294 Exonuclease SbcD 0.22 GFF2654 FIG00638524: hypothetical protein low > 78
Enterobacter sp. TBS_079 0.20 MPMX20_00985 Nuclease SbcCD subunit D 0.20 MPMX20_02041 putative DNA endonuclease SmrA low > 85
Shewanella amazonensis SB2B 0.16 Sama_1267 exonuclease SbcD, putative (RefSeq) 0.19 Sama_2161 hypothetical protein (RefSeq) low > 62

Not shown: 12 genomes with orthologs for PP_2025 only; 15 genomes with orthologs for PP_1824 only