Conservation of cofitness between PP_3415 and PP_0137 in Pseudomonas putida KT2440

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_3415 Transcriptional regulator, LacI family 1.0 PP_0137 glutamate/aspartate-proton DAACS transporter 0.26 18
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_3336 transcriptional regulator, LacI family 0.87 Psyr_0174 Sodium:dicarboxylate symporter low > 86
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_3336 transcriptional regulator, LacI family 0.87 Psyr_0174 Sodium:dicarboxylate symporter low > 86
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_1925 Gluconate utilization system Gnt-I transcriptional repressor 0.86 PfGW456L13_578 Glutamate-aspartate carrier protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_558 Gluconate utilization system Gnt-I transcriptional repressor 0.84 Pf1N1B4_1888 Glutamate-aspartate carrier protein low > 87
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_2865 Gluconate utilization system Gnt-I transcriptional repressor 0.85 Pf6N2E2_4148 Glutamate-aspartate carrier protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_05065 LacI family transcriptional regulator 0.85 AO356_11400 glutamate:protein symporter low > 104
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_03255 LacI family transcriptional regulator 0.86 AO353_10990 glutamate:protein symporter low > 101
Pseudomonas sp. RS175 0.66 PFR28_00593 HTH-type transcriptional regulator GntR 0.85 PFR28_04638 Proton/glutamate-aspartate symporter low > 88
Pseudomonas fluorescens SBW25 0.66 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.87 PFLU_RS00460 glutamate/aspartate:proton symporter GltP low > 109
Pseudomonas fluorescens SBW25-INTG 0.66 PFLU_RS23595 LacI family DNA-binding transcriptional regulator 0.87 PFLU_RS00460 glutamate/aspartate:proton symporter GltP low > 109
Pseudomonas simiae WCS417 0.66 PS417_21990 LacI family transcriptional regulator 0.87 PS417_00470 glutamate:protein symporter low > 88
Pseudomonas stutzeri RCH2 0.48 Psest_2126 Transcriptional regulators 0.30 Psest_4075 symporter for L-glutamate, L-glutamine, and L-proline (from data) low > 67
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_01485 transcriptional regulator 0.29 CSW01_05920 dicarboxylate/amino acid:cation symporter low > 62
Dickeya dianthicola 67-19 0.32 HGI48_RS19900 gluconate operon transcriptional repressor GntR 0.71 HGI48_RS07365 glutamate/aspartate:proton symporter GltP low > 71
Dickeya dianthicola ME23 0.32 DZA65_RS20970 gluconate operon transcriptional repressor GntR 0.71 DZA65_RS07875 glutamate/aspartate:proton symporter GltP low > 75
Dickeya dadantii 3937 0.32 DDA3937_RS19785 gluconate operon transcriptional repressor GntR 0.71 DDA3937_RS07490 glutamate/aspartate:proton symporter GltP low > 74
Alteromonas macleodii MIT1002 0.31 MIT1002_03475 Gluconate utilization system GNT-I transcriptional repressor 0.28 MIT1002_01542 Glutamate-aspartate carrier protein low > 70
Klebsiella michiganensis M5al 0.30 BWI76_RS06150 transcriptional regulator 0.70 BWI76_RS02105 glutamate/aspartate:proton symporter GltP low > 92
Erwinia tracheiphila SCR3 0.30 LU632_RS19160 gntR gluconate operon transcriptional repressor GntR 0.73 LU632_RS23310 gltP glutamate/aspartate:proton symporter GltP low > 74
Pantoea sp. MT58 0.29 IAI47_01650 gluconate operon transcriptional repressor GntR 0.73 IAI47_17710 glutamate/aspartate:proton symporter GltP low > 76
Pectobacterium carotovorum WPP14 0.29 HER17_RS16515 LacI family DNA-binding transcriptional regulator 0.72 HER17_RS14145 glutamate/aspartate:proton symporter GltP low > 75
Enterobacter sp. TBS_079 0.29 MPMX20_04319 HTH-type transcriptional regulator GntR 0.71 MPMX20_00292 Proton/glutamate-aspartate symporter low > 85
Enterobacter asburiae PDN3 0.29 EX28DRAFT_4274 transcriptional regulator, LacI family 0.72 EX28DRAFT_4231 Na+/H+-dicarboxylate symporters 0.59 43
Escherichia coli ECRC102 0.29 NIAGMN_14605 gntR gluconate operon transcriptional repressor GntR 0.71 NIAGMN_10630 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli ECRC101 0.29 MCAODC_07365 gntR gluconate operon transcriptional repressor GntR 0.71 MCAODC_03295 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli Nissle 1917 0.29 ECOLIN_RS19675 gluconate operon transcriptional repressor GntR 0.71 ECOLIN_RS23590 glutamate/aspartate:proton symporter GltP low > 52
Escherichia coli BW25113 0.29 b3438 gntR DNA-binding transcriptional repressor (NCBI) 0.71 b4077 gltP glutamate/aspartate:proton symporter (NCBI) low > 76
Escherichia fergusonii Becca 0.29 EFB2_00382 HTH-type transcriptional regulator GntR 0.71 EFB2_04512 Proton/glutamate-aspartate symporter low > 86
Escherichia coli ECRC62 0.29 BNILDI_02870 gntR gluconate operon transcriptional repressor GntR 0.71 BNILDI_06490 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli ECOR38 0.29 HEPCGN_15660 gntR gluconate operon transcriptional repressor GntR 0.71 HEPCGN_11410 gltP glutamate/aspartate:proton symporter GltP low > 85
Escherichia coli ECRC99 0.29 KEDOAH_11305 gntR gluconate operon transcriptional repressor GntR 0.71 KEDOAH_15365 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli ECRC98 0.29 JDDGAC_20465 gntR gluconate operon transcriptional repressor GntR 0.71 JDDGAC_16420 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli ECRC101 0.29 OKFHMN_16835 gntR gluconate operon transcriptional repressor GntR 0.71 OKFHMN_12785 gltP glutamate/aspartate:proton symporter GltP — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_00264 HTH-type transcriptional regulator GntR 0.71 OHPLBJKB_03963 Proton/glutamate-aspartate symporter 0.44 67
Escherichia coli ECOR27 0.28 NOLOHH_08635 gntR gluconate operon transcriptional repressor GntR 0.71 NOLOHH_05035 gltP glutamate/aspartate:proton symporter GltP low > 57
Escherichia coli BL21 0.28 ECD_03289 d-gluconate inducible gluconate regulon transcriptional repressor 0.71 ECD_03949 glutamate/aspartate:proton symporter low > 60
Serratia liquefaciens MT49 0.28 IAI46_23965 gluconate operon transcriptional repressor GntR 0.73 IAI46_01410 glutamate/aspartate:proton symporter GltP low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.28 GFF406 Transcriptional regulator, LacI family 0.72 GFF1460 Glutamate-aspartate carrier protein low > 78

Not shown: 24 genomes with orthologs for PP_3415 only; 13 genomes with orthologs for PP_0137 only