Conservation of cofitness between PFLU_RS07240 and PFLU_RS11305 in Pseudomonas fluorescens SBW25

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens SBW25 1.0 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.0 PFLU_RS11305 xylose isomerase 0.61 7
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS07240 sigma factor AlgU regulatory protein MucB 1.00 PFLU_RS11305 xylose isomerase low > 109
Pseudomonas simiae WCS417 0.92 PS417_07130 RNA polymerase sigma-H factor AlgU 0.99 PS417_10945 Xylose isomerase (EC 5.3.1.5) (from data) low > 88
Pseudomonas fluorescens FW300-N2C3 0.72 AO356_04565 RNA polymerase subunit sigma 0.88 AO356_28500 Xylose isomerase (EC 5.3.1.5) (from data) low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_2754 Sigma factor RpoE negative regulatory protein RseB precursor 0.91 Pf6N2E2_1454 Xylose isomerase (EC 5.3.1.5) low > 103
Pseudomonas sp. RS175 0.70 PFR28_00692 Sigma factor AlgU regulatory protein MucB 0.88 PFR28_02348 Xylose isomerase low > 88
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.92 Psyr_2883 D-xylose isomerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_3956 sigma E regulatory protein, MucB/RseB 0.92 Psyr_2883 D-xylose isomerase low > 86
Burkholderia phytofirmans PsJN 0.17 BPHYT_RS14395 sugar dehydratase 0.73 BPHYT_RS32825 Xylose isomerase (EC 5.3.1.5) (from data) low > 109
Paraburkholderia bryophila 376MFSha3.1 0.16 H281DRAFT_04357 sigma E regulatory protein, MucB/RseB 0.73 H281DRAFT_03876 D-xylose isomerase low > 103
Paraburkholderia graminis OAS925 0.16 ABIE53_003041 sigma-E factor negative regulatory protein RseB 0.72 ABIE53_004929 xylose isomerase low > 113
Paraburkholderia sabiae LMG 24235 0.16 QEN71_RS04585 MucB/RseB C-terminal domain-containing protein 0.72 QEN71_RS25875 xylose isomerase low > 153
Pantoea sp. MT58 0.15 IAI47_04860 sigma-E factor regulatory protein RseB 0.68 IAI47_00195 xylose isomerase low > 76
Dickeya dianthicola ME23 0.14 DZA65_RS16920 sigma-E factor regulatory protein RseB 0.70 DZA65_RS00310 xylose isomerase low > 75
Dickeya dianthicola 67-19 0.14 HGI48_RS15840 sigma-E factor regulatory protein RseB 0.70 HGI48_RS00310 xylose isomerase low > 71
Dickeya dadantii 3937 0.14 DDA3937_RS15755 sigma-E factor regulatory protein RseB 0.70 DDA3937_RS20935 xylose isomerase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.14 GFF2109 Sigma factor RpoE negative regulatory protein RseB precursor 0.70 GFF444 Xylose isomerase (EC 5.3.1.5) low > 78
Enterobacter sp. TBS_079 0.13 MPMX20_03442 Sigma-E factor regulatory protein RseB 0.71 MPMX20_00165 Xylose isomerase low > 85
Klebsiella michiganensis M5al 0.13 BWI76_RS21345 sigma-E factor regulatory protein RseB 0.71 BWI76_RS27025 Xylose isomerase (EC 5.3.1.5) (from data) low > 92
Enterobacter asburiae PDN3 0.13 EX28DRAFT_0074 sigma E regulatory protein, MucB/RseB 0.70 EX28DRAFT_3830 xylose isomerase low > 76
Rahnella sp. WP5 0.13 EX31_RS21810 sigma-E factor regulatory protein RseB 0.70 EX31_RS09765 xylose isomerase low > 89
Escherichia coli BW25113 0.13 b2571 rseB periplasmic negative regulator of sigmaE (NCBI) 0.70 b3565 xylA xylose isomerase (NCBI) low > 76
Escherichia coli ECRC98 0.13 JDDGAC_25050 rseB sigma-E factor regulatory protein RseB 0.70 JDDGAC_19585 xylA xylose isomerase low > 86
Escherichia coli ECRC62 0.13 BNILDI_11860 rseB sigma-E factor regulatory protein RseB 0.70 BNILDI_03645 xylA xylose isomerase low > 75
Escherichia coli ECRC102 0.13 NIAGMN_19155 rseB sigma-E factor regulatory protein RseB 0.70 NIAGMN_13715 xylA xylose isomerase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.13 OHPLBJKB_01136 Sigma-E factor regulatory protein RseB 0.70 OHPLBJKB_00139 Xylose isomerase low > 73
Escherichia coli ECRC100 0.13 OKFHMN_21385 rseB sigma-E factor regulatory protein RseB 0.70 OKFHMN_15955 xylA xylose isomerase low > 80
Escherichia fergusonii Becca 0.13 EFB2_01325 Sigma-E factor regulatory protein RseB 0.70 EFB2_00242 Xylose isomerase low > 86
Escherichia coli ECRC101 0.13 MCAODC_11915 rseB sigma-E factor regulatory protein RseB 0.70 MCAODC_06470 xylA xylose isomerase low > 87
Escherichia coli ECOR38 0.13 HEPCGN_20530 rseB sigma-E factor regulatory protein RseB 0.70 HEPCGN_14840 xylA xylose isomerase low > 87
Escherichia coli ECRC99 0.13 KEDOAH_06835 rseB sigma-E factor regulatory protein RseB 0.70 KEDOAH_12195 xylA xylose isomerase — —
Escherichia coli BL21 0.13 ECD_02465 anti-sigma E factor, binds RseA 0.70 ECD_03417 D-xylose isomerase low > 61
Escherichia coli ECOR27 0.13 NOLOHH_13060 rseB sigma-E factor regulatory protein RseB 0.70 NOLOHH_07900 xylA xylose isomerase low > 75
Escherichia coli Nissle 1917 0.13 ECOLIN_RS14550 sigma-E factor regulatory protein RseB 0.70 ECOLIN_RS20390 xylose isomerase low > 55
Pectobacterium carotovorum WPP14 0.13 HER17_RS05790 sigma-E factor regulatory protein RseB 0.71 HER17_RS21085 xylose isomerase low > 75
Serratia liquefaciens MT49 0.12 IAI46_19575 sigma-E factor regulatory protein RseB 0.71 IAI46_00280 xylose isomerase low > 86

Not shown: 25 genomes with orthologs for PFLU_RS07240 only; 20 genomes with orthologs for PFLU_RS11305 only