Conservation of cofitness between JDDGAC_09800 and JDDGAC_22340 in Escherichia coli ECRC98

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC98 1.0 JDDGAC_09800 ldtB L,D-transpeptidase 1.0 JDDGAC_22340 bacA undecaprenyl-diphosphate phosphatase 0.92 18
Escherichia coli ECRC101 1.00 MCAODC_25380 ldtB L,D-transpeptidase 1.00 MCAODC_09220 bacA undecaprenyl-diphosphate phosphatase 0.77 7
Escherichia coli ECRC102 1.00 NIAGMN_04210 ldtB L,D-transpeptidase 1.00 NIAGMN_16470 bacA undecaprenyl-diphosphate phosphatase
Escherichia coli ECRC62 1.00 BNILDI_20795 ldtB L,D-transpeptidase 1.00 BNILDI_01020 bacA undecaprenyl-diphosphate phosphatase 0.78 45
Escherichia coli Nissle 1917 1.00 ECOLIN_RS04365 L,D-transpeptidase 1.00 ECOLIN_RS17655 undecaprenyl-diphosphate phosphatase
Escherichia coli ECRC99 1.00 KEDOAH_21745 ldtB L,D-transpeptidase 1.00 KEDOAH_09440 bacA undecaprenyl-diphosphate phosphatase
Escherichia coli ECRC100 1.00 OKFHMN_06165 ldtB L,D-transpeptidase 1.00 OKFHMN_18705 bacA undecaprenyl-diphosphate phosphatase 0.69 29
Escherichia coli BW25113 1.00 b0819 ybiS hypothetical protein (NCBI) 1.00 b3057 bacA undecaprenyl pyrophosphate phosphatase (NCBI) low > 76
Escherichia coli ECOR38 1.00 HEPCGN_01875 ldtB L,D-transpeptidase 1.00 HEPCGN_17560 bacA undecaprenyl-diphosphate phosphatase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_02894 putative L,D-transpeptidase YbiS 1.00 OHPLBJKB_00647 Undecaprenyl-diphosphatase low > 73
Escherichia fergusonii Becca 1.00 EFB2_03286 putative L,D-transpeptidase YbiS 1.00 EFB2_00754 Undecaprenyl-diphosphatase low > 86
Escherichia coli BL21 1.00 ECD_00786 L,D-transpeptidase linking Lpp to murein 1.00 ECD_02927 undecaprenyl pyrophosphate phosphatase low > 61
Escherichia coli ECOR27 1.00 NOLOHH_22515 ldtB L,D-transpeptidase 1.00 NOLOHH_10495 bacA undecaprenyl-diphosphate phosphatase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.94 GFF716 L,D-transpeptidase YbiS 0.94 GFF3171 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 78
Klebsiella michiganensis M5al 0.93 BWI76_RS09030 transpeptidase 0.92 BWI76_RS24480 undecaprenyl-diphosphatase low > 92
Enterobacter sp. TBS_079 0.91 MPMX20_01456 putative L,D-transpeptidase YbiS 0.94 MPMX20_03894 Undecaprenyl-diphosphatase low > 85
Enterobacter asburiae PDN3 0.90 EX28DRAFT_2148 Uncharacterized protein conserved in bacteria 0.94 EX28DRAFT_3085 undecaprenyl-diphosphatase UppP low > 76
Serratia liquefaciens MT49 0.73 IAI46_02600 L,D-transpeptidase family protein 0.82 IAI46_22080 undecaprenyl-diphosphate phosphatase low > 86
Rahnella sp. WP5 0.73 EX31_RS10780 L,D-transpeptidase family protein 0.81 EX31_RS08165 undecaprenyl-diphosphate phosphatase low > 89
Pantoea sp. MT58 0.72 IAI47_13415 L,D-transpeptidase family protein 0.85 IAI47_03080 undecaprenyl-diphosphate phosphatase low > 76
Dickeya dadantii 3937 0.69 DDA3937_RS03570 L,D-transpeptidase family protein 0.79 DDA3937_RS17125 undecaprenyl-diphosphate phosphatase low > 74
Dickeya dianthicola ME23 0.69 DZA65_RS03790 L,D-transpeptidase family protein 0.79 DZA65_RS18260 undecaprenyl-diphosphate phosphatase low > 75
Dickeya dianthicola 67-19 0.69 HGI48_RS03670 L,D-transpeptidase family protein 0.79 HGI48_RS17175 undecaprenyl-diphosphate phosphatase 0.75 37
Pectobacterium carotovorum WPP14 0.68 HER17_RS17580 L,D-transpeptidase family protein 0.83 HER17_RS04015 undecaprenyl-diphosphate phosphatase low > 75
Shewanella amazonensis SB2B 0.62 Sama_0726 ErfK/YbiS/YcfS/YnhG (RefSeq) 0.25 Sama_0831 undecaprenyl pyrophosphate phosphatase (RefSeq) low > 62
Shewanella sp. ANA-3 0.60 Shewana3_0844 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) 0.26 Shewana3_3079 undecaprenyl pyrophosphate phosphatase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO3748 LysM domain protein (NCBI ptt file) 0.36 SO4274 undecaprenol kinase, putative (NCBI ptt file) low > 76
Pseudomonas sp. S08-1 0.33 OH686_01780 L,D-transpeptidase 0.41 OH686_00730 undecaprenyl-diphosphatase UppP
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_2221 ErfK/YbiS/YcfS/YnhG family protein 0.42 PfGW456L13_3016 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 87
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_2474 ErfK/YbiS/YcfS/YnhG family protein 0.40 Pf6N2E2_773 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 103
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_03215 hypothetical protein 0.40 AO356_27775 UDP pyrophosphate phosphatase low > 104
Pseudomonas stutzeri RCH2 0.32 Psest_2334 Uncharacterized protein conserved in bacteria 0.40 Psest_2113 undecaprenyl-diphosphatase UppP
Pseudomonas fluorescens FW300-N1B4 0.32 Pf1N1B4_292 ErfK/YbiS/YcfS/YnhG family protein 0.41 Pf1N1B4_4741 Undecaprenyl-diphosphatase (EC 3.6.1.27) low > 87

Not shown: 0 genomes with orthologs for JDDGAC_09800 only; 68 genomes with orthologs for JDDGAC_22340 only