Conservation of cofitness between HER17_RS06010 and HER17_RS20770 in Pectobacterium carotovorum WPP14

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS06010 Fe-S cluster assembly transcriptional regulator IscR 1.0 HER17_RS20770 ADP-glyceromanno-heptose 6-epimerase 0.68 15
Dickeya dadantii 3937 0.95 DDA3937_RS15550 Fe-S cluster assembly transcriptional regulator IscR 0.92 DDA3937_RS20440 ADP-glyceromanno-heptose 6-epimerase — —
Dickeya dianthicola 67-19 0.94 HGI48_RS15650 Fe-S cluster assembly transcriptional regulator IscR 0.91 HGI48_RS00770 ADP-glyceromanno-heptose 6-epimerase — —
Dickeya dianthicola ME23 0.94 DZA65_RS16725 Fe-S cluster assembly transcriptional regulator IscR 0.91 DZA65_RS00825 ADP-glyceromanno-heptose 6-epimerase — —
Serratia liquefaciens MT49 0.92 IAI46_19360 Fe-S cluster assembly transcriptional regulator IscR 0.90 IAI46_24735 ADP-glyceromanno-heptose 6-epimerase — —
Rahnella sp. WP5 0.88 EX31_RS20550 Fe-S cluster assembly transcriptional regulator IscR 0.91 EX31_RS14395 ADP-glyceromanno-heptose 6-epimerase — —
Erwinia tracheiphila SCR3 0.86 LU632_RS17875 iscR Fe-S cluster assembly transcriptional regulator IscR 0.87 LU632_RS21915 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Pantoea sp. MT58 0.82 IAI47_05000 Fe-S cluster assembly transcriptional regulator IscR 0.85 IAI47_00690 ADP-glyceromanno-heptose 6-epimerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF2436 Iron-sulfur cluster regulator IscR 0.86 GFF392 ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_01178 HTH-type transcriptional regulator IscR 0.87 OHPLBJKB_00081 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Enterobacter sp. TBS_079 0.71 MPMX20_03412 HTH-type transcriptional regulator IscR 0.87 MPMX20_00114 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS14370 Fe-S cluster assembly transcriptional regulator IscR 0.87 ECOLIN_RS20645 ADP-glyceromanno-heptose 6-epimerase low > 55
Escherichia coli BW25113 0.71 b2531 iscR DNA-binding transcriptional repressor (NCBI) 0.86 b3619 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) low > 76
Escherichia coli ECOR38 0.71 HEPCGN_20755 iscR Fe-S cluster assembly transcriptional regulator IscR 0.87 HEPCGN_14545 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia fergusonii Becca 0.71 EFB2_01359 HTH-type transcriptional regulator IscR 0.87 EFB2_00192 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Escherichia coli ECRC100 0.71 OKFHMN_21615 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 OKFHMN_15700 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC101 0.71 MCAODC_12145 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 MCAODC_06210 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC102 0.71 NIAGMN_19385 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 NIAGMN_13460 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECOR27 0.71 NOLOHH_13285 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 NOLOHH_07580 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC62 0.71 BNILDI_12085 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 BNILDI_03930 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Escherichia coli ECRC99 0.71 KEDOAH_06605 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 KEDOAH_12450 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Enterobacter asburiae PDN3 0.71 EX28DRAFT_0108 transcriptional regulator, BadM/Rrf2 family 0.87 EX28DRAFT_3871 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Escherichia coli BL21 0.71 ECD_02423 isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor 0.86 ECD_03476 ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding — —
Escherichia coli ECRC98 0.71 JDDGAC_25290 iscR Fe-S cluster assembly transcriptional regulator IscR 0.86 JDDGAC_19325 rfaD ADP-glyceromanno-heptose 6-epimerase — —
Klebsiella michiganensis M5al 0.70 BWI76_RS21165 Fe-S cluster assembly transcriptional regulator IscR 0.88 BWI76_RS27260 ADP-L-glycero-D-mannoheptose-6-epimerase — —
Shewanella loihica PV-4 0.66 Shew_2318 BadM/Rrf2 family transcriptional regulator (RefSeq) 0.62 Shew_3694 ADP-L-glycero-D-manno-heptose-6-epimerase (RefSeq) — —
Dechlorosoma suillum PS 0.48 Dsui_2369 iron-sulfur cluster assembly transcription factor IscR 0.57 Dsui_1953 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS05100 Fe-S cluster assembly transcriptional regulator IscR 0.49 ABCV34_RS07065 ADP-glyceromanno-heptose 6-epimerase — —
Azospirillum sp. SherDot2 0.44 MPMX19_01654 HTH-type transcriptional regulator IscR 0.36 MPMX19_01823 ADP-L-glycero-D-manno-heptose-6-epimerase — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS05830 Rrf2 family transcriptional regulator 0.35 AZOBR_RS31160 ADP-L-glycero-D-manno-heptose-6-epimerase low > 97
Rhodospirillum rubrum S1H 0.44 Rru_A2028 Transcriptional Regulator, BadM/Rrf2 family (NCBI) 0.36 Rru_A3278 ADP-L-glycero-D-manno-heptose-6-epimerase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.43 AMB_RS15265 Rrf2 family transcriptional regulator 0.33 AMB_RS03075 ADP-glyceromanno-heptose 6-epimerase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS04565 Rrf2 family transcriptional regulator 0.30 A4249_RS05625 ADP-glyceromanno-heptose 6-epimerase low > 48
Desulfovibrio vulgaris Miyazaki F 0.31 DvMF_2591 transcriptional regulator, BadM/Rrf2 family (RefSeq) 0.36 DvMF_1734 ADP-L-glycero-D-manno-heptose-6-epimerase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.30 DVU0529 rrf2 Rrf2 protein (voordouw) 0.36 DVU0481 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase (TIGR) — —
Fusobacterium nucleatum SB010 0.22 HUW76_04175 Rrf2 family transcriptional regulator 0.38 HUW76_01300 ADP-glyceromanno-heptose 6-epimerase — —

Not shown: 27 genomes with orthologs for HER17_RS06010 only; 16 genomes with orthologs for HER17_RS20770 only