Conservation of cofitness between HER17_RS04235 and HER17_RS19690 in Pectobacterium carotovorum WPP14

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04235 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 1.0 HER17_RS19690 cystathionine beta-lyase 0.96 6
Dickeya dadantii 3937 0.80 DDA3937_RS16945 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.85 DDA3937_RS01815 cystathionine beta-lyase 0.90 13
Dickeya dianthicola 67-19 0.79 HGI48_RS17015 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.85 HGI48_RS01710 cystathionine beta-lyase 0.88 11
Dickeya dianthicola ME23 0.79 DZA65_RS18090 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.85 DZA65_RS01785 cystathionine beta-lyase 0.83 5
Serratia liquefaciens MT49 0.78 IAI46_03685 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.82 IAI46_21725 cystathionine beta-lyase low > 86
Pantoea sp. MT58 0.78 IAI47_04150 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.73 IAI47_03215 cystathionine beta-lyase low > 76
Rahnella sp. WP5 0.77 EX31_RS07905 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.81 EX31_RS08025 cystathionine beta-lyase low > 89
Enterobacter asburiae PDN3 0.77 EX28DRAFT_2853 sulfite reductase [NADPH] flavoprotein, alpha-component 0.77 EX28DRAFT_3046 cystathionine beta-lyase, bacterial 0.77 33
Escherichia coli ECRC62 0.75 BNILDI_10735 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.78 BNILDI_00780 metC cystathionine beta-lyase 0.99 1
Escherichia coli ECOR27 0.75 NOLOHH_12185 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.78 NOLOHH_10735 metC cystathionine beta-lyase 0.98 7
Escherichia coli BW25113 0.75 b2764 cysJ sulfite reductase, alpha subunit, flavoprotein (NCBI) 0.77 b3008 metC cystathionine beta-lyase (NCBI) 0.94 12
Enterobacter sp. TBS_079 0.75 MPMX20_03643 Sulfite reductase [NADPH] flavoprotein alpha-component 0.78 MPMX20_03852 Cystathionine beta-lyase MetC 0.63 14
Escherichia coli BL21 0.75 ECD_02609 sulfite reductase, alpha subunit, flavoprotein 0.77 ECD_02881 cystathionine beta-lyase, PLP-dependent 0.84 3
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_00969 Sulfite reductase [NADPH] flavoprotein alpha-component 0.78 OHPLBJKB_00693 Cystathionine beta-lyase MetC low > 73
Escherichia fergusonii Becca 0.75 EFB2_01153 Sulfite reductase [NADPH] flavoprotein alpha-component 0.77 EFB2_00802 Cystathionine beta-lyase MetC low > 86
Escherichia coli Nissle 1917 0.75 ECOLIN_RS15410 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.78 ECOLIN_RS17315 cystathionine beta-lyase 0.86 19
Escherichia coli ECOR38 0.75 HEPCGN_19095 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.77 HEPCGN_17825 metC cystathionine beta-lyase 0.98 2
Klebsiella michiganensis M5al 0.74 BWI76_RS22765 sulfite reductase subunit alpha 0.77 BWI76_RS24285 cystathionine beta-lyase 0.83 27
Escherichia coli ECRC99 0.74 KEDOAH_07755 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.77 KEDOAH_09185 metC cystathionine beta-lyase — —
Escherichia coli ECRC98 0.74 JDDGAC_24035 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.77 JDDGAC_22595 metC cystathionine beta-lyase 0.83 26
Escherichia coli ECRC101 0.74 MCAODC_10895 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.77 MCAODC_09475 metC cystathionine beta-lyase 0.67 53
Escherichia coli ECRC100 0.74 OKFHMN_20370 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.77 OKFHMN_18960 metC cystathionine beta-lyase 0.98 17
Escherichia coli ECRC102 0.74 NIAGMN_18140 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.77 NIAGMN_16725 metC cystathionine beta-lyase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF4820 Sulfite reductase [NADPH] flavoprotein alpha-component (EC 1.8.1.2) 0.77 GFF3120 Cystathionine beta-lyase (EC 4.4.1.8) low > 78
Erwinia tracheiphila SCR3 0.73 LU632_RS06400 cysJ NADPH-dependent assimilatory sulfite reductase flavoprotein subunit 0.73 LU632_RS20545 metC cystathionine beta-lyase 0.79 38
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_02010 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.65 CSW01_08400 cystathionine beta-lyase low > 62
Shewanella amazonensis SB2B 0.49 Sama_2839 sulfite reductase subunit alpha (RefSeq) 0.53 Sama_2008 cystathionine beta-lyase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.49 SO3738 cysJ sulfite reductase (NADPH) flavoprotein alpha-component (NCBI ptt file) 0.54 SO2191 metC cystathionine beta-lyase (NCBI ptt file) 0.91 47
Shewanella loihica PV-4 0.49 Shew_0665 sulfite reductase (NADPH) flavoprotein, alpha chain (RefSeq) 0.56 Shew_1789 cystathionine beta-lyase (RefSeq) 0.89 43
Shewanella sp. ANA-3 0.48 Shewana3_0855 sulfite reductase (NADPH) alpha subunit (RefSeq) 0.54 Shewana3_2414 cystathionine beta-lyase (RefSeq) 0.91 35
Castellaniella sp019104865 MT123 0.39 ABCV34_RS00220 assimilatory sulfite reductase (NADPH) flavoprotein subunit 0.30 ABCV34_RS12385 PLP-dependent aspartate aminotransferase family protein low > 48
Agrobacterium fabrum C58 0.32 Atu0146 sulfite reductase (NADPH) flavoprotein alpha-component 0.38 Atu1575 cystathionine beta lyase low > 89
Caulobacter crescentus NA1000 0.12 CCNA_03159 sulfite reductase (NADPH) flavoprotein alpha-component 0.35 CCNA_01491 cystathionine beta-lyase low > 66
Caulobacter crescentus NA1000 Δfur 0.12 CCNA_03159 sulfite reductase (NADPH) flavoprotein alpha-component 0.35 CCNA_01491 cystathionine beta-lyase low > 67

Not shown: 9 genomes with orthologs for HER17_RS04235 only; 28 genomes with orthologs for HER17_RS19690 only