Conservation of cofitness between HER17_RS00665 and HER17_RS16020 in Pectobacterium carotovorum WPP14

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS00665 envelope stress response regulator transcription factor CpxR 1.0 HER17_RS16020 branched-chain amino acid transport system II carrier protein 0.84 6
Pantoea sp. MT58 0.92 IAI47_00760 envelope stress response regulator transcription factor CpxR 0.82 IAI47_14835 branched-chain amino acid transporter carrier protein BrnQ low > 76
Erwinia tracheiphila SCR3 0.92 LU632_RS21855 cpxR envelope stress response regulator transcription factor CpxR 0.77 LU632_RS18890 brnQ branched-chain amino acid transport system II carrier protein low > 74
Rahnella sp. WP5 0.90 EX31_RS14320 envelope stress response regulator transcription factor CpxR 0.80 EX31_RS22065 branched-chain amino acid transport system II carrier protein low > 89
Dickeya dadantii 3937 0.89 DDA3937_RS00780 envelope stress response regulator transcription factor CpxR 0.89 DDA3937_RS05445 branched-chain amino acid transport system II carrier protein — —
Dickeya dianthicola ME23 0.88 DZA65_RS21610 envelope stress response regulator transcription factor CpxR 0.89 DZA65_RS05830 branched-chain amino acid transport system II carrier protein low > 75
Dickeya dianthicola 67-19 0.88 HGI48_RS20595 envelope stress response regulator transcription factor CpxR 0.89 HGI48_RS05505 branched-chain amino acid transport system II carrier protein low > 71
Enterobacter sp. TBS_079 0.86 MPMX20_04556 Transcriptional regulatory protein CpxR 0.79 MPMX20_00988 Branched-chain amino acid transport system 2 carrier protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF2280 Copper-sensing two-component system response regulator CpxR 0.79 GFF4299 Branched-chain amino acid transport system carrier protein low > 78
Enterobacter asburiae PDN3 0.86 EX28DRAFT_4387 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.79 EX28DRAFT_2573 branched-chain amino acid uptake carrier low > 76
Escherichia coli ECRC101 0.85 MCAODC_04345 cpxR envelope stress response regulator transcription factor CpxR 0.79 MCAODC_27760 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 87
Escherichia coli ECOR38 0.85 HEPCGN_12490 cpxR envelope stress response regulator transcription factor CpxR 0.79 HEPCGN_07175 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 87
Escherichia coli ECRC102 0.85 NIAGMN_11600 cpxR envelope stress response regulator transcription factor CpxR 0.79 NIAGMN_06590 brnQ branched-chain amino acid transporter carrier protein BrnQ — —
Escherichia coli ECRC62 0.85 BNILDI_05545 cpxR envelope stress response regulator transcription factor CpxR 0.79 BNILDI_22880 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 75
Escherichia coli BW25113 0.85 b3912 cpxR DNA-binding response regulator in two-component regulatory system with CpxA (NCBI) 0.79 b0401 brnQ predicted branched chain amino acid transporter (LIV-II) (NCBI) low > 76
Klebsiella michiganensis M5al 0.85 BWI76_RS00720 DNA-binding response regulator 0.79 BWI76_RS06240 branched-chain amino acid transport system 2 carrier protein BrnQ 0.30 77
Escherichia coli ECRC100 0.85 OKFHMN_13845 cpxR envelope stress response regulator transcription factor CpxR 0.79 OKFHMN_08535 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 80
Escherichia coli ECOR27 0.85 NOLOHH_05980 cpxR envelope stress response regulator transcription factor CpxR 0.79 NOLOHH_01465 brnQ branched-chain amino acid transporter carrier protein BrnQ low > 75
Escherichia coli BL21 0.85 ECD_03798 response regulator in two-component regulatory system with CpxA 0.79 ECD_00349 branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val low > 61
Escherichia coli ECRC99 0.85 KEDOAH_14310 cpxR envelope stress response regulator transcription factor CpxR 0.79 KEDOAH_19430 brnQ branched-chain amino acid transporter carrier protein BrnQ — —
Escherichia coli Nissle 1917 0.85 ECOLIN_RS22540 envelope stress response regulator transcription factor CpxR 0.79 ECOLIN_RS02420 branched-chain amino acid transporter carrier protein BrnQ — —
Escherichia coli ECRC98 0.85 JDDGAC_17470 cpxR envelope stress response regulator transcription factor CpxR 0.79 JDDGAC_12190 brnQ branched-chain amino acid transporter carrier protein BrnQ 0.89 35
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_04138 Transcriptional regulatory protein CpxR 0.79 OHPLBJKB_03275 Branched-chain amino acid transport system 2 carrier protein low > 73
Escherichia fergusonii Becca 0.85 EFB2_04705 Transcriptional regulatory protein CpxR 0.79 EFB2_03656 Branched-chain amino acid transport system 2 carrier protein 0.26 84
Serratia liquefaciens MT49 0.84 IAI46_24660 envelope stress response regulator transcription factor CpxR 0.85 IAI46_04795 branched-chain amino acid transport system II carrier protein low > 86
Vibrio cholerae E7946 ATCC 55056 0.56 CSW01_13590 DNA-binding response regulator 0.35 CSW01_03485 branched-chain amino acid transport system II carrier protein low > 62
Shewanella loihica PV-4 0.54 Shew_3570 two component transcriptional regulator (RefSeq) 0.37 Shew_0769 branched-chain amino acid transport system II carrier protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.52 Sama_3432 response regulator receiver protein (RefSeq) 0.35 Sama_2740 branched-chain amino acid transport system II carrier protein BrnQ (RefSeq) low > 62
Shewanella oneidensis MR-1 0.50 SO4477 cpxR transcriptional regulatory protein CpxR (NCBI ptt file) 0.33 SO0949 brnQ branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.50 Shewana3_0253 two component transcriptional regulator (RefSeq) 0.34 Shewana3_3332 branched-chain amino acid transport system II carrier protein (RefSeq) low > 73
Pseudomonas stutzeri RCH2 0.40 Psest_1884 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.52 Psest_2489 branched-chain amino acid uptake carrier low > 67
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_3547 DNA-binding response regulator 0.66 Pf1N1B4_3686 Branched-chain amino acid transport system carrier protein low > 87
Pseudomonas sp. S08-1 0.39 OH686_20775 Two-component transcriptional response regulator, LuxR family 0.68 OH686_01945 branched-chain amino acid transport system II carrier protein low > 80
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_4409 DNA-binding response regulator 0.67 PfGW456L13_4264 Branched-chain amino acid transport system carrier protein low > 87
Pseudomonas sp. RS175 0.39 PFR28_03323 Transcriptional regulatory protein CpxR 0.67 PFR28_03091 Branched-chain amino acid transport system 2 carrier protein low > 88

Not shown: 4 genomes with orthologs for HER17_RS00665 only; 12 genomes with orthologs for HER17_RS16020 only