Conservation of cofitness between HER17_RS12840 and HER17_RS15420 in Pectobacterium carotovorum WPP14

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS12840 LysR family transcriptional regulator 1.0 HER17_RS15420 glycine cleavage system transcriptional repressor 0.86 2
Dickeya dianthicola 67-19 0.84 HGI48_RS09285 LysR family transcriptional regulator 0.88 HGI48_RS06105 glycine cleavage system transcriptional repressor low > 71
Dickeya dadantii 3937 0.83 DDA3937_RS09260 LysR family transcriptional regulator 0.89 DDA3937_RS06060 glycine cleavage system transcriptional repressor low > 74
Dickeya dianthicola ME23 0.83 DZA65_RS09590 LysR family transcriptional regulator 0.88 DZA65_RS06455 glycine cleavage system transcriptional repressor low > 75
Serratia liquefaciens MT49 0.82 IAI46_17215 LysR family transcriptional regulator 0.82 IAI46_18785 glycine cleavage system transcriptional repressor low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF3777 LysR family transcriptional regulator YeiE 0.78 GFF2179 Glycine cleavage system transcriptional antiactivator GcvR low > 78
Escherichia coli ECRC62 0.79 BNILDI_13990 yieE DNA-binding transcriptional regulator YeiE 0.78 BNILDI_12380 gcvR glycine cleavage system transcriptional repressor low > 75
Escherichia coli ECRC98 0.79 JDDGAC_27455 yieE DNA-binding transcriptional regulator YeiE 0.78 JDDGAC_25855 gcvR glycine cleavage system transcriptional repressor low > 86
Escherichia coli ECRC99 0.79 KEDOAH_04690 yieE DNA-binding transcriptional regulator YeiE 0.78 KEDOAH_06310 gcvR glycine cleavage system transcriptional repressor — —
Escherichia coli ECRC101 0.79 MCAODC_14545 yieE DNA-binding transcriptional regulator YeiE 0.78 MCAODC_12440 gcvR glycine cleavage system transcriptional repressor low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_01554 HTH-type transcriptional regulator CysL 0.78 OHPLBJKB_01250 Glycine cleavage system transcriptional repressor low > 73
Escherichia coli ECRC100 0.79 OKFHMN_23495 yieE DNA-binding transcriptional regulator YeiE 0.78 OKFHMN_21910 gcvR glycine cleavage system transcriptional repressor low > 80
Enterobacter asburiae PDN3 0.79 EX28DRAFT_0399 Transcriptional regulator 0.75 EX28DRAFT_0181 Glycine cleavage system regulatory protein low > 76
Escherichia coli BL21 0.79 ECD_02086 putative DNA-binding transcriptional regulator 0.78 ECD_02371 transcriptional repressor, regulatory protein accessory to GcvA low > 61
Escherichia coli ECOR38 0.79 HEPCGN_22760 yieE DNA-binding transcriptional regulator YeiE 0.78 HEPCGN_21080 gcvR glycine cleavage system transcriptional repressor low > 87
Escherichia coli ECRC102 0.79 NIAGMN_21260 yieE DNA-binding transcriptional regulator YeiE 0.78 NIAGMN_19680 gcvR glycine cleavage system transcriptional repressor — —
Escherichia coli BW25113 0.79 b2157 yeiE predicted DNA-binding transcriptional regulator (NCBI) 0.78 b2479 gcvR transcriptional regulation of gcv operon (VIMSS) low > 76
Escherichia coli Nissle 1917 0.79 ECOLIN_RS12630 DNA-binding transcriptional regulator YeiE 0.78 ECOLIN_RS14150 glycine cleavage system transcriptional repressor low > 55
Rahnella sp. WP5 0.78 EX31_RS19050 LysR family transcriptional regulator 0.79 EX31_RS22735 glycine cleavage system transcriptional repressor 0.46 14
Enterobacter sp. TBS_079 0.78 MPMX20_03128 HTH-type transcriptional activator CmpR 0.76 MPMX20_03341 Glycine cleavage system transcriptional repressor low > 85
Klebsiella michiganensis M5al 0.78 BWI76_RS19690 LysR family transcriptional regulator 0.72 BWI76_RS20910 glycine cleavage system transcriptional repressor low > 92
Erwinia tracheiphila SCR3 0.74 LU632_RS17295 LysR family transcriptional regulator 0.76 LU632_RS08320 glycine cleavage system transcriptional repressor low > 74
Escherichia fergusonii Becca 0.71 EFB2_01699 HTH-type transcriptional regulator CysL 0.78 EFB2_01407 Glycine cleavage system transcriptional repressor low > 86
Escherichia coli ECOR27 0.71 NOLOHH_15070 yieE DNA-binding transcriptional regulator YeiE 0.78 NOLOHH_13570 gcvR glycine cleavage system transcriptional repressor low > 75
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.979.1 LysR family transcriptional regulator YeiE 0.19 Xcc-8004.3086.1 Glycine cleavage system transcriptional antiactivator GcvR — —
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_11795 LysR family transcriptional regulator 0.37 CSW01_10760 glycine cleavage system transcriptional regulator 0.56 16
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS12835 LysR family transcriptional regulator 0.19 LRK54_RS15080 glycine cleavage system protein R low > 59
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS19780 LysR family transcriptional regulator 0.21 ABZR86_RS00780 glycine cleavage system protein R low > 74
Rhodanobacter denitrificans MT42 0.33 LRK55_RS12535 LysR family transcriptional regulator 0.19 LRK55_RS14795 glycine cleavage system protein R low > 63
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_02230 lysR LysR family transcriptional regulator 0.19 OKGIIK_03850 Glycine cleavage system transcriptional repressor low > 52
Shewanella amazonensis SB2B 0.33 Sama_1882 LysR family transcriptional regulator (RefSeq) 0.32 Sama_1909 glycine cleavage system transcriptional repressor, putative (RefSeq) low > 62
Shewanella oneidensis MR-1 0.30 SO2561 transcriptional regulator, LysR family (NCBI ptt file) 0.30 SO1878 glycine cleavage system transcriptional repressor, putative (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.30 Shewana3_2367 LysR family transcriptional regulator (RefSeq) 0.29 Shewana3_1655 glycine cleavage system transcriptional repressor, putative (RefSeq) low > 73

Not shown: 58 genomes with orthologs for HER17_RS12840 only; 2 genomes with orthologs for HER17_RS15420 only