Conservation of cofitness between HER17_RS20550 and HER17_RS14540 in Pectobacterium carotovorum WPP14

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS20550 fatty acid oxidation complex subunit alpha FadB 1.0 HER17_RS14540 GDP-mannose 4,6-dehydratase 0.68 3
Escherichia coli BW25113 0.75 b3846 fadB fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase (NCBI) 0.80 b2053 gmd GDP-D-mannose dehydratase, NAD(P)-binding (NCBI) low > 76
Escherichia coli ECOR27 0.75 NOLOHH_06375 fadB fatty acid oxidation complex subunit alpha FadB 0.80 NOLOHH_15675 GDP-mannose 4,6-dehydratase low > 75
Escherichia coli ECRC99 0.75 KEDOAH_13905 fadB fatty acid oxidation complex subunit alpha FadB 0.80 KEDOAH_03805 GDP-mannose 4,6-dehydratase
Escherichia coli ECRC100 0.75 OKFHMN_14245 fadB fatty acid oxidation complex subunit alpha FadB 0.80 OKFHMN_24345 GDP-mannose 4,6-dehydratase low > 80
Escherichia coli ECOR38 0.75 HEPCGN_12875 fadB fatty acid oxidation complex subunit alpha FadB 0.80 HEPCGN_03045 GDP-mannose 4,6-dehydratase low > 87
Escherichia coli ECRC101 0.75 MCAODC_04750 fadB fatty acid oxidation complex subunit alpha FadB 0.80 MCAODC_20595 GDP-mannose 4,6-dehydratase low > 87
Escherichia coli ECRC102 0.75 NIAGMN_12000 fadB fatty acid oxidation complex subunit alpha FadB 0.80 NIAGMN_22290 GDP-mannose 4,6-dehydratase
Escherichia coli ECRC98 0.75 JDDGAC_17870 fadB fatty acid oxidation complex subunit alpha FadB 0.80 JDDGAC_28455 GDP-mannose 4,6-dehydratase low > 86
Enterobacter asburiae PDN3 0.74 EX28DRAFT_4510 fatty oxidation complex, alpha subunit FadB 0.81 EX28DRAFT_0502 GDP-mannose 4,6-dehydratase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF273 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.80 GFF3875 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 78
Enterobacter sp. TBS_079 0.73 MPMX20_04436 Fatty acid oxidation complex subunit alpha 0.80 MPMX20_03035 GDP-mannose 4,6-dehydratase low > 85
Escherichia coli ECRC62 0.73 BNILDI_05155 fadB fatty acid oxidation complex subunit alpha FadB 0.80 BNILDI_14585 GDP-mannose 4,6-dehydratase low > 75
Escherichia coli BL21 0.73 ECD_03737 fused 3-hydroxybutyryl-CoA epimerase/delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.80 ECD_01959 GDP-D-mannose dehydratase, NAD(P)-binding low > 61
Escherichia fergusonii Becca 0.73 EFB2_04771 Fatty acid oxidation complex subunit alpha 0.80 EFB2_01801 GDP-mannose 4,6-dehydratase low > 86
Rahnella sp. WP5 0.73 EX31_RS14565 fatty acid oxidation complex subunit alpha FadB 0.49 EX31_RS02865 GDP-mannose 4,6-dehydratase low > 89
Dickeya dadantii 3937 0.72 DDA3937_RS20250 fatty acid oxidation complex subunit alpha FadB 0.79 DDA3937_RS18665 GDP-mannose 4,6-dehydratase low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS00975 fatty acid oxidation complex subunit alpha FadB 0.80 HGI48_RS18595 GDP-mannose 4,6-dehydratase low > 71
Dickeya dianthicola ME23 0.71 DZA65_RS01035 fatty acid oxidation complex subunit alpha FadB 0.80 DZA65_RS19730 GDP-mannose 4,6-dehydratase low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_13970 fatty acid oxidation complex subunit alpha FadB 0.79 CSW01_01280 GDP-mannose 4,6-dehydratase low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.49 Psyr_0916 GDP-mannose 4,6-dehydratase low > 86
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_3290 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase 0.49 Psyr_0916 GDP-mannose 4,6-dehydratase 0.40 3
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.75 PFLU_RS17890 GDP-mannose 4,6-dehydratase low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS07650 fatty acid oxidation complex subunit alpha FadB 0.75 PFLU_RS17890 GDP-mannose 4,6-dehydratase low > 109
Pseudomonas sp. RS175 0.52 PFR28_01110 Fatty acid oxidation complex subunit alpha 0.41 PFR28_04554 GDP-mannose 4,6-dehydratase low > 88
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_3903 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.41 Pf1N1B4_1965 GDP-mannose 4,6-dehydratase (EC 4.2.1.47)
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2290 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.42 Pf6N2E2_4242 GDP-mannose 4,6-dehydratase (EC 4.2.1.47)
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_4041 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.41 PfGW456L13_2338 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 87
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_00510 multifunctional fatty acid oxidation complex subunit alpha 0.42 AO353_10245 GDP-mannose 4,6-dehydratase low > 101
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_02330 multifunctional fatty acid oxidation complex subunit alpha 0.42 AO356_11835 GDP-mannose 4,6-dehydratase
Pseudomonas stutzeri RCH2 0.52 Psest_2654 fatty oxidation complex, alpha subunit FadB 0.80 Psest_1818 GDP-mannose 4,6-dehydratase
Pseudomonas putida KT2440 0.52 PP_2136 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase 0.50 PP_1799 GDP-mannose 4,6-dehydratase low > 96
Pseudomonas sp. S08-1 0.52 OH686_21925 fatty oxidation complex, alpha subunit FadB 0.41 OH686_11980 GDP-mannose 4,6-dehydratase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF2109 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) 0.74 GFF2554 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) low > 90
Rhodopseudomonas palustris CGA009 0.24 TX73_019255 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein 0.46 TX73_020470 GDP-mannose 4,6-dehydratase low > 86
Ralstonia solanacearum PSI07 0.22 RPSI07_RS16345 3-hydroxyacyl-CoA dehydrogenase 0.49 RPSI07_RS19840 GDP-mannose 4,6-dehydratase low > 81
Mycobacterium tuberculosis H37Rv 0.22 Rv0860 Probable fatty oxidation protein FadB 0.49 Rv1511 GDP-D-mannose dehydratase GmdA (GDP-mannose 4,6 dehydratase) (GMD)

Not shown: 17 genomes with orthologs for HER17_RS20550 only; 38 genomes with orthologs for HER17_RS14540 only