Conservation of cofitness between HEPCGN_04840 and HEPCGN_19705 in Escherichia coli ECOR38

36 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 HEPCGN_19705 mutS DNA mismatch repair protein MutS 0.52 20
Escherichia coli ECOR27 0.99 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 NOLOHH_12370 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC62 0.99 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 BNILDI_10920 mutS DNA mismatch repair protein MutS low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.99 OHPLBJKB_01000 DNA mismatch repair protein MutS 0.55 3
Escherichia coli BL21 0.98 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.99 ECD_02583 methyl-directed mismatch repair protein — —
Escherichia coli BW25113 0.98 b1835 yebU putative nucleolar proteins (VIMSS) 0.99 b2733 mutS DNA mismatch repair protein (NCBI) low > 76
Escherichia fergusonii Becca 0.98 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.98 EFB2_01179 DNA mismatch repair protein MutS low > 86
Escherichia coli Nissle 1917 0.98 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 ECOLIN_RS15275 DNA mismatch repair protein MutS — —
Escherichia coli ECRC101 0.98 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 MCAODC_11050 mutS DNA mismatch repair protein MutS low > 87
Escherichia coli ECRC102 0.98 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 NIAGMN_18295 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC99 0.98 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 KEDOAH_07610 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC100 0.98 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 OKFHMN_20525 mutS DNA mismatch repair protein MutS — —
Escherichia coli ECRC98 0.98 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 JDDGAC_24190 mutS DNA mismatch repair protein MutS 0.55 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.93 GFF4773 DNA mismatch repair protein MutS low > 78
Enterobacter asburiae PDN3 0.81 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.92 EX28DRAFT_2829 DNA mismatch repair protein MutS low > 76
Enterobacter sp. TBS_079 0.79 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.93 MPMX20_03619 DNA mismatch repair protein MutS low > 85
Klebsiella michiganensis M5al 0.77 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.92 BWI76_RS22600 DNA mismatch repair protein MutS low > 92
Pantoea sp. MT58 0.70 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.82 IAI47_04240 DNA mismatch repair protein MutS low > 76
Serratia liquefaciens MT49 0.69 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.85 IAI46_03800 DNA mismatch repair protein MutS low > 86
Rahnella sp. WP5 0.67 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.84 EX31_RS07820 DNA mismatch repair protein MutS low > 89
Pectobacterium carotovorum WPP14 0.67 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.84 HER17_RS16220 DNA mismatch repair protein MutS low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.85 DDA3937_RS05230 DNA mismatch repair protein MutS low > 74
Dickeya dianthicola ME23 0.65 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.85 DZA65_RS05570 DNA mismatch repair protein MutS low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.85 HGI48_RS05230 DNA mismatch repair protein MutS low > 71
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.71 CSW01_02840 DNA mismatch repair protein MutS low > 62
Shewanella sp. ANA-3 0.51 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.67 Shewana3_1125 DNA mismatch repair protein MutS (RefSeq) low > 73
Shewanella loihica PV-4 0.51 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.66 Shew_1214 DNA mismatch repair protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.65 SO3431 mutS DNA mismatch repair protein MutS (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.48 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.65 Sama_1045 DNA mismatch repair protein MutS (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.52 B158DRAFT_1529 DNA mismatch repair protein MutS low > 40
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.36 BT3121 DNA mismatch repair protein mutS (NCBI ptt file) low > 81
Echinicola vietnamensis KMM 6221, DSM 17526 0.18 Echvi_1153 tRNA and rRNA cytosine-C5-methylases 0.35 Echvi_0960 DNA mismatch repair protein MutS low > 79
Bacteroides stercoris CC31F 0.18 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase 0.36 HMPREF1181_RS01980 DNA mismatch repair protein MutS low > 56
Bacteroides ovatus ATCC 8483 0.18 BACOVA_00671 NOL1/NOP2/sun family protein 0.36 BACOVA_02824 DNA mismatch repair protein MutS low > 94
Pontibacter actiniarum KMM 6156, DSM 19842 0.18 CA264_05610 rRNA methyltransferase 0.36 CA264_18545 DNA mismatch repair protein MutS low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS00225 RNA methyltransferase 0.37 ABZR88_RS10580 DNA mismatch repair protein MutS low > 71
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase 0.35 HMPREF1078_RS06455 DNA mismatch repair protein MutS low > 61

Not shown: 0 genomes with orthologs for HEPCGN_04840 only; 63 genomes with orthologs for HEPCGN_19705 only