Conservation of cofitness between HEPCGN_05285 and HEPCGN_16585 in Escherichia coli ECOR38

28 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_05285 astB N-succinylarginine dihydrolase 1.0 HEPCGN_16585 csrD RNase E specificity factor CsrD 0.69 17
Escherichia coli BW25113 0.98 b1745 astB succinylarginine dihydrolase (NCBI) 0.99 b3252 yhdA conserved inner membrane protein (NCBI) low > 76
Escherichia coli ECRC100 0.98 OKFHMN_26920 astB N-succinylarginine dihydrolase 0.99 OKFHMN_17720 csrD RNase E specificity factor CsrD low > 80
Escherichia coli ECRC101 0.98 MCAODC_18490 astB N-succinylarginine dihydrolase 0.99 MCAODC_08240 csrD RNase E specificity factor CsrD low > 87
Escherichia coli ECRC99 0.98 KEDOAH_01190 astB N-succinylarginine dihydrolase 0.99 KEDOAH_10430 csrD RNase E specificity factor CsrD — —
Escherichia coli ECRC98 0.98 JDDGAC_01495 astB N-succinylarginine dihydrolase 0.99 JDDGAC_21345 csrD RNase E specificity factor CsrD low > 86
Escherichia coli BL21 0.98 ECD_01714 succinylarginine dihydrolase 0.99 ECD_03111 targeting factor for csrBC sRNA degradation — —
Escherichia coli ECRC102 0.98 NIAGMN_01145 astB N-succinylarginine dihydrolase 0.99 NIAGMN_15480 csrD RNase E specificity factor CsrD — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_01987 N-succinylarginine dihydrolase 0.99 OHPLBJKB_00453 RNase E specificity factor CsrD low > 73
Escherichia coli ECOR27 0.97 NOLOHH_17435 astB N-succinylarginine dihydrolase 0.99 NOLOHH_09505 csrD RNase E specificity factor CsrD low > 75
Escherichia coli ECRC62 0.97 BNILDI_16220 astB N-succinylarginine dihydrolase 0.99 BNILDI_02015 csrD RNase E specificity factor CsrD low > 75
Escherichia coli Nissle 1917 0.95 ECOLIN_RS09730 N-succinylarginine dihydrolase 0.98 ECOLIN_RS18635 RNase E specificity factor CsrD 0.50 8
Escherichia fergusonii Becca 0.95 EFB2_02248 N-succinylarginine dihydrolase 0.99 EFB2_00579 RNase E specificity factor CsrD low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.85 GFF3495 Succinylarginine dihydrolase (EC 3.5.3.23) 0.84 GFF2133 RNase E specificity factor CsrD low > 78
Enterobacter sp. TBS_079 0.78 MPMX20_01868 N-succinylarginine dihydrolase 0.79 MPMX20_04158 RNase E specificity factor CsrD 0.33 70
Enterobacter asburiae PDN3 0.78 EX28DRAFT_1749 succinylarginine dihydrolase (EC 3.5.3.23) 0.79 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain low > 76
Klebsiella michiganensis M5al 0.74 BWI76_RS11685 Succinylarginine dihydrolase (EC 3.5.3.23) (from data) 0.76 BWI76_RS25505 RNase E specificity factor CsrD low > 92
Pantoea sp. MT58 0.71 IAI47_11080 N-succinylarginine dihydrolase 0.51 IAI47_02430 RNase E specificity factor CsrD low > 76
Serratia liquefaciens MT49 0.68 IAI46_15320 N-succinylarginine dihydrolase 0.56 IAI46_22725 RNase E specificity factor CsrD 0.39 62
Rahnella sp. WP5 0.60 EX31_RS17395 N-succinylarginine dihydrolase 0.49 EX31_RS12230 RNase E specificity factor CsrD low > 89
Pseudomonas putida KT2440 0.58 PP_4477 N-succinylarginine dihydrolase 0.07 PP_0165 GGDEF domain protein low > 96
Pseudomonas fluorescens FW300-N2E3 0.56 AO353_03005 succinylarginine dihydrolase 0.09 AO353_11170 hypothetical protein low > 101
Pseudomonas sp. RS175 0.55 PFR28_03279 N-succinylarginine dihydrolase 0.08 PFR28_04783 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_18745 succinylarginine dihydrolase 0.09 AO356_10580 hypothetical protein low > 104
Shewanella amazonensis SB2B 0.55 Sama_1321 Succinylarginine dihydrolase (EC 3.5.3.23) (from data) 0.19 Sama_0449 regulatory protein CsrD (RefSeq) low > 62
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_3445 Succinylarginine dihydrolase (EC 3.5.3.23) 0.10 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD low > 87
Shewanella loihica PV-4 0.53 Shew_2225 succinylarginine dihydrolase (RefSeq) 0.19 Shew_0384 regulatory protein CsrD (RefSeq) low > 60
Shewanella sp. ANA-3 0.53 Shewana3_1728 Succinylarginine dihydrolase (EC 3.5.3.23) (from data) 0.19 Shewana3_3668 regulatory protein CsrD (RefSeq) low > 73
Shewanella oneidensis MR-1 0.52 SO2706 astB Succinylarginine dihydrolase (EC 3.5.3.23) (from data) 0.20 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) low > 76

Not shown: 20 genomes with orthologs for HEPCGN_05285 only; 6 genomes with orthologs for HEPCGN_16585 only