Conservation of cofitness between HEPCGN_04840 and HEPCGN_01450 in Escherichia coli ECOR38

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECOR38 1.0 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.0 HEPCGN_01450 tolQ Tol-Pal system protein TolQ 0.53 18
Escherichia coli ECOR27 0.99 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 NOLOHH_23255 tolQ Tol-Pal system protein TolQ — —
Escherichia coli ECRC62 0.99 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 BNILDI_21250 tolQ Tol-Pal system protein TolQ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 1.00 OHPLBJKB_02976 Protein TolQ low > 73
Escherichia coli BL21 0.98 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 1.00 ECD_00697 membrane spanning protein in TolA-TolQ-TolR complex — —
Escherichia coli BW25113 0.98 b1835 yebU putative nucleolar proteins (VIMSS) 1.00 b0737 tolQ membrane spanning protein in TolA-TolQ-TolR complex (NCBI) low > 76
Escherichia fergusonii Becca 0.98 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.99 EFB2_03369 Tol-Pal system protein TolQ 0.28 77
Escherichia coli Nissle 1917 0.98 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.99 ECOLIN_RS03925 Tol-Pal system protein TolQ — —
Escherichia coli ECRC101 0.98 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 MCAODC_26040 tolQ Tol-Pal system protein TolQ low > 87
Escherichia coli ECRC102 0.98 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 NIAGMN_04870 tolQ Tol-Pal system protein TolQ — —
Escherichia coli ECRC98 0.98 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 JDDGAC_10475 tolQ Tol-Pal system protein TolQ low > 86
Escherichia coli ECRC99 0.98 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 KEDOAH_21145 tolQ Tol-Pal system protein TolQ — —
Escherichia coli ECRC100 0.98 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 1.00 OKFHMN_06820 tolQ Tol-Pal system protein TolQ — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.87 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 0.99 GFF4651 MotA/TolQ/ExbB proton channel family protein — —
Enterobacter asburiae PDN3 0.81 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.97 EX28DRAFT_2254 TolQ protein — —
Enterobacter sp. TBS_079 0.79 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.98 MPMX20_01366 Tol-Pal system protein TolQ low > 85
Klebsiella michiganensis M5al 0.77 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 BWI76_RS08520 colicin transporter TolQ 0.43 35
Pantoea sp. MT58 0.70 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.91 IAI47_13700 Tol-Pal system protein TolQ low > 76
Serratia liquefaciens MT49 0.69 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.91 IAI46_06320 Tol-Pal system protein TolQ — —
Rahnella sp. WP5 0.67 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.90 EX31_RS23480 Tol-Pal system protein TolQ low > 89
Pectobacterium carotovorum WPP14 0.67 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.90 HER17_RS14880 Tol-Pal system protein TolQ low > 75
Dickeya dadantii 3937 0.66 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.92 DDA3937_RS06500 Tol-Pal system protein TolQ — —
Dickeya dianthicola ME23 0.65 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.91 DZA65_RS06895 Tol-Pal system protein TolQ low > 75
Dickeya dianthicola 67-19 0.65 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.91 HGI48_RS06545 Tol-Pal system protein TolQ low > 71
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.67 CSW01_09210 protein TolQ — —
Shewanella sp. ANA-3 0.51 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.63 Shewana3_2534 MotA/TolQ/ExbB proton channel (RefSeq) — —
Shewanella loihica PV-4 0.51 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.65 Shew_1524 MotA/TolQ/ExbB proton channel (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.63 SO2751 MotA/TolQ/ExbB proton channel family protein (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.48 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.54 Sama_2089 MotA/TolQ/ExbB proton channel (RefSeq) — —
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.59 B158DRAFT_1138 Cell division and transport-associated protein TolQ (TC 2.C.1.2.1) — —
Bacteroides thetaiotaomicron VPI-5482 0.19 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.14 BT3919 putative biopolymer transport protein (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.18 BACOVA_00671 NOL1/NOP2/sun family protein 0.13 BACOVA_01144 transporter, MotA/TolQ/ExbB proton channel family protein low > 94
Parabacteroides merdae CL09T00C40 0.17 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase 0.14 HMPREF1078_RS10270 MotA/TolQ/ExbB proton channel family protein low > 61

Not shown: 4 genomes with orthologs for HEPCGN_04840 only; 55 genomes with orthologs for HEPCGN_01450 only