Conservation of cofitness between PS417_12135 and PS417_26370 in Pseudomonas simiae WCS417

33 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_12135 peptidylprolyl isomerase 1.0 PS417_26370 RNA helicase 0.30 2
Pseudomonas fluorescens SBW25 1.00 PFLU_RS12825 peptidyl-prolyl cis-trans isomerase 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS12825 peptidyl-prolyl cis-trans isomerase 1.00 PFLU_RS28020 ATP-dependent RNA helicase DbpA low > 109
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_21750 peptidylprolyl isomerase 0.91 AO353_07850 ATP-dependent RNA helicase low > 101
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_2870 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) 0.93 PfGW456L13_1078 ATP-dependent 23S rRNA helicase DbpA low > 87
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_5637 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) 0.93 Pf1N1B4_2412 ATP-dependent 23S rRNA helicase DbpA — —
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_00440 peptidylprolyl isomerase 0.95 AO356_13770 ATP-dependent RNA helicase low > 104
Pseudomonas sp. RS175 0.97 PFR28_01391 Peptidyl-prolyl cis-trans isomerase C 0.94 PFR28_04172 ATP-dependent RNA helicase DbpA low > 88
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_2045 Peptidyl-prolyl cis-trans isomerase PpiC (EC 5.2.1.8) 0.95 Pf6N2E2_4673 ATP-dependent 23S rRNA helicase DbpA low > 103
Pseudomonas syringae pv. syringae B728a 0.94 Psyr_2907 PpiC-type peptidyl-prolyl cis-trans isomerase 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.94 Psyr_2907 PpiC-type peptidyl-prolyl cis-trans isomerase 0.88 Psyr_0516 ATP-dependent RNA helicase DbpA low > 86
Pseudomonas putida KT2440 0.92 PP_3070 peptidyl-prolyl cis-trans isomerase C (rotamase C) 0.85 PP_4952 ATP-dependent RNA helicase, specific for 23S rRNA — —
Pseudomonas stutzeri RCH2 0.84 Psest_2122 Parvulin-like peptidyl-prolyl isomerase 0.84 Psest_0344 Superfamily II DNA and RNA helicases low > 67
Pseudomonas sp. S08-1 0.82 OH686_00765 Peptidyl-prolyl cis-trans isomerase PpiC 0.74 OH686_14770 ATP-dependent 23S rRNA helicase DbpA low > 80
Shewanella amazonensis SB2B 0.68 Sama_1666 cell wall hydrolase/autolysin (RefSeq) 0.53 Sama_0752 ATP-dependent RNA helicase DbpA (RefSeq) — —
Alteromonas macleodii MIT1002 0.62 MIT1002_03923 Peptidyl-prolyl cis-trans isomerase C 0.43 MIT1002_03748 ATP-independent RNA helicase DbpA — —
Pantoea sp. MT58 0.55 IAI47_18550 peptidylprolyl isomerase 0.50 IAI47_15055 ATP-dependent RNA helicase DbpA low > 76
Escherichia coli Nissle 1917 0.54 ECOLIN_RS21685 peptidylprolyl isomerase PpiC 0.53 ECOLIN_RS08060 ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC62 0.54 BNILDI_04770 ppiC peptidylprolyl isomerase PpiC 0.52 BNILDI_18025 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC98 0.54 JDDGAC_18240 ppiC peptidylprolyl isomerase PpiC 0.52 JDDGAC_04720 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC101 0.54 MCAODC_05125 ppiC peptidylprolyl isomerase PpiC 0.52 MCAODC_16095 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli BL21 0.54 ECD_03653 peptidyl-prolyl cis-trans isomerase C (rotamase C) 0.52 ECD_01320 ATP-dependent RNA helicase, specific for 23S rRNA low > 60
Escherichia coli ECRC102 0.54 NIAGMN_12375 ppiC peptidylprolyl isomerase PpiC 0.52 NIAGMN_26330 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECRC101 0.54 OKFHMN_14620 ppiC peptidylprolyl isomerase PpiC 0.52 OKFHMN_02160 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli ECOR27 0.54 NOLOHH_06755 ppiC peptidylprolyl isomerase PpiC 0.52 NOLOHH_19875 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04278 Peptidyl-prolyl cis-trans isomerase C 0.52 OHPLBJKB_02338 ATP-dependent RNA helicase DbpA low > 73
Escherichia coli BW25113 0.54 b3775 ppiC peptidyl-prolyl cis-trans isomerase C (rotamase C) (NCBI) 0.52 b1343 dbpA ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) low > 76
Escherichia coli ECRC99 0.54 KEDOAH_13530 ppiC peptidylprolyl isomerase PpiC 0.52 KEDOAH_26595 dbpA ATP-dependent RNA helicase DbpA — —
Escherichia fergusonii Becca 0.54 EFB2_04861 Peptidyl-prolyl cis-trans isomerase C 0.52 EFB2_02584 ATP-dependent RNA helicase DbpA low > 86
Serratia liquefaciens MT49 0.54 IAI46_00560 peptidylprolyl isomerase 0.58 IAI46_14765 ATP-dependent RNA helicase DbpA low > 86
Enterobacter asburiae PDN3 0.53 EX28DRAFT_4448 PPIC-type PPIASE domain 0.53 EX28DRAFT_1006 Superfamily II DNA and RNA helicases low > 76
Klebsiella michiganensis M5al 0.53 BWI76_RS01000 peptidyl-prolyl cis-trans isomerase 0.53 BWI76_RS12705 ATP-dependent RNA helicase low > 92
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_18890 peptidyl-prolyl cis-trans isomerase 0.51 CSW01_12980 ATP-dependent RNA helicase DbpA low > 62
Escherichia coli ECOR38 0.51 HEPCGN_13330 ppiC peptidylprolyl isomerase PpiC 0.52 HEPCGN_26000 dbpA ATP-dependent RNA helicase DbpA low > 85

Not shown: 1 genomes with orthologs for PS417_12135 only; 34 genomes with orthologs for PS417_26370 only