Conservation of cofitness between PS417_24580 and PS417_24335 in Pseudomonas simiae WCS417

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_24580 pseudouridine synthase 1.0 PS417_24335 50S rRNA methyltransferase 0.21 9
Pseudomonas fluorescens SBW25 0.95 PFLU_RS26510 pseudouridine synthase 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS26510 pseudouridine synthase 0.92 PFLU_RS26260 class I SAM-dependent methyltransferase low > 109
Pseudomonas sp. RS175 0.88 PFR28_03839 Ribosomal large subunit pseudouridine synthase E 0.86 PFR28_03798 Ribosomal RNA large subunit methyltransferase G low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_4336 ribosomal large subunit pseudouridine synthase E 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_4336 ribosomal large subunit pseudouridine synthase E 0.80 Psyr_4279 16S rRNA m(2)G 1207 methyltransferase / 23S rRNA m(2)G-1835 methyltransferase 0.32 31
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_2722 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.88 Pf1N1B4_2763 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.86 AO356_15455 pseudouridine synthase 0.86 AO356_15650 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_06330 pseudouridine synthase 0.86 AO353_13950 50S rRNA methyltransferase low > 101
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_1389 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.90 PfGW456L13_1438 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_5028 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) 0.86 Pf6N2E2_5071 23S rRNA (guanine-N-2-) -methyltransferase rlmG (EC 2.1.1.-) low > 103
Pseudomonas putida KT2440 0.82 PP_4778 23S rRNA pseudouridine 2457 synthase 0.80 PP_4648 Ribosomal RNA large subunit methyltransferase G low > 96
Pseudomonas stutzeri RCH2 0.78 Psest_0568 pseudouridine synthase 0.72 Psest_3440 16S RNA G1207 methylase RsmC low > 67
Pseudomonas sp. S08-1 0.76 OH686_08840 LSU rRNA pseudouridine(2457) synthase 0.74 OH686_16135 23S rRNA (guanine(1835)-N(2))-methyltransferase low > 80
Alteromonas macleodii MIT1002 0.60 MIT1002_01829 Ribosomal large subunit pseudouridine synthase E 0.32 MIT1002_00689 Ribosomal RNA large subunit methyltransferase G low > 70
Shewanella amazonensis SB2B 0.59 Sama_2060 pseudouridylate synthase (RefSeq) 0.33 Sama_2548 rRNA (guanine-N(2)-)-methyltransferase (RefSeq) low > 62
Escherichia coli ECRC62 0.57 BNILDI_19055 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.35 BNILDI_01155 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli BW25113 0.57 b1135 ymfC orf, hypothetical protein (VIMSS) 0.35 b3084 ygjO putative enzyme (VIMSS) low > 76
Escherichia coli ECOR27 0.57 NOLOHH_20890 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.36 NOLOHH_10360 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 57
Escherichia coli BL21 0.57 ECD_01133 23S rRNA pseudouridine(2457) synthase 0.35 ECD_02953 23S rRNA m(2)G1835 methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC101 0.57 OKFHMN_00755 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.36 OKFHMN_18560 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC102 0.57 NIAGMN_24900 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.36 NIAGMN_16325 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC101 0.57 MCAODC_22330 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.36 MCAODC_09075 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC99 0.57 KEDOAH_24840 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.36 KEDOAH_09585 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli ECRC98 0.57 JDDGAC_06610 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.36 JDDGAC_22195 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_02533 Ribosomal large subunit pseudouridine synthase E 0.35 OHPLBJKB_00618 Ribosomal RNA large subunit methyltransferase G low > 73
Klebsiella michiganensis M5al 0.56 BWI76_RS11325 23S rRNA pseudouridine synthase E 0.34 BWI76_RS24680 23S rRNA (guanine(1835)-N(2))-methyltransferase — —
Escherichia fergusonii Becca 0.56 EFB2_02840 Ribosomal large subunit pseudouridine synthase E 0.36 EFB2_00728 Ribosomal RNA large subunit methyltransferase G low > 86
Enterobacter sp. TBS_079 0.56 MPMX20_01819 Ribosomal large subunit pseudouridine synthase E 0.35 MPMX20_03995 Ribosomal RNA large subunit methyltransferase G low > 85
Pantoea sp. MT58 0.55 IAI47_11905 23S rRNA pseudouridine(2457) synthase RluE 0.34 IAI47_02950 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 76
Escherichia coli ECOR38 0.55 HEPCGN_24230 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.35 HEPCGN_17415 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 85
Enterobacter asburiae PDN3 0.55 EX28DRAFT_1795 pseudouridine synthase 0.35 EX28DRAFT_3153 16S RNA G1207 methylase RsmC low > 76
Rahnella sp. WP5 0.54 EX31_RS24585 23S rRNA pseudouridine(2457) synthase RluE 0.33 EX31_RS08350 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 89
Erwinia tracheiphila SCR3 0.53 LU632_RS14565 rluE 23S rRNA pseudouridine(2457) synthase RluE 0.33 LU632_RS02335 rlmG 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 74
Pectobacterium carotovorum WPP14 0.53 HER17_RS11615 23S rRNA pseudouridine(2457) synthase RluE 0.37 HER17_RS18680 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 75
Serratia liquefaciens MT49 0.53 IAI46_10455 23S rRNA pseudouridine(2457) synthase RluE 0.37 IAI46_22185 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 86
Dickeya dianthicola ME23 0.53 DZA65_RS11855 23S rRNA pseudouridine(2457) synthase RluE 0.34 DZA65_RS03000 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS11520 23S rRNA pseudouridine(2457) synthase RluE 0.33 HGI48_RS02825 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 71
Dickeya dadantii 3937 0.53 DDA3937_RS11475 23S rRNA pseudouridine(2457) synthase RluE 0.34 DDA3937_RS02850 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG low > 74

Not shown: 22 genomes with orthologs for PS417_24580 only; 7 genomes with orthologs for PS417_24335 only