Conservation of cofitness between GFF4300 and GFF4227 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF4300 Proline-specific permease proY 1.0 GFF4227 Putative LysR family transcriptional regulator 0.50 11
Klebsiella michiganensis M5al 0.89 BWI76_RS06245 proline-specific permease ProY 0.41 BWI76_RS10685 LysR family transcriptional regulator low > 92
Enterobacter sp. TBS_079 0.88 MPMX20_00989 Proline-specific permease ProY 0.43 MPMX20_03495 HTH-type transcriptional regulator DmlR low > 85
Escherichia coli ECOR38 0.87 HEPCGN_07170 proY proline-specific permease ProY 0.40 HEPCGN_05020 dmlR DNA-binding transcriptional regulator DmlR low > 87
Escherichia coli BL21 0.87 ECD_00350 proline-specific permease 0.40 ECD_01769 transcriptional activator of dmlA — —
Escherichia coli Nissle 1917 0.87 ECOLIN_RS02425 proline-specific permease ProY 0.40 ECOLIN_RS17670 L-tartrate utilization transcriptional activator TtdR low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.87 OHPLBJKB_03274 Proline-specific permease ProY 0.40 OHPLBJKB_01934 HTH-type transcriptional regulator DmlR low > 73
Escherichia coli ECRC98 0.87 JDDGAC_12185 proY proline-specific permease ProY 0.40 JDDGAC_01205 dmlR DNA-binding transcriptional regulator DmlR — —
Escherichia coli ECRC100 0.87 OKFHMN_08530 proY proline-specific permease ProY 0.40 OKFHMN_26630 dmlR DNA-binding transcriptional regulator DmlR low > 80
Escherichia coli ECRC101 0.87 MCAODC_27755 proY proline-specific permease ProY 0.40 MCAODC_18780 dmlR DNA-binding transcriptional regulator DmlR low > 87
Escherichia coli ECOR27 0.87 NOLOHH_01460 proY proline-specific permease ProY 0.40 NOLOHH_17150 dmlR DNA-binding transcriptional regulator DmlR — —
Escherichia coli ECRC62 0.87 BNILDI_22875 proY proline-specific permease ProY 0.40 BNILDI_15935 dmlR DNA-binding transcriptional regulator DmlR low > 75
Escherichia fergusonii Becca 0.87 EFB2_03655 Proline-specific permease ProY 0.40 EFB2_00751 HTH-type transcriptional regulator DmlR low > 86
Escherichia coli BW25113 0.87 b0402 proY predicted cryptic proline transporter (NCBI) 0.40 b3060 ygiP predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECRC102 0.87 NIAGMN_06585 proY proline-specific permease ProY 0.40 NIAGMN_01435 dmlR DNA-binding transcriptional regulator DmlR — —
Escherichia coli ECRC99 0.87 KEDOAH_19435 proY proline-specific permease ProY 0.40 KEDOAH_01480 dmlR DNA-binding transcriptional regulator DmlR — —
Pantoea sp. MT58 0.80 IAI47_14830 proline-specific permease ProY 0.29 IAI47_17520 LysR family transcriptional regulator low > 76
Dickeya dianthicola ME23 0.80 DZA65_RS05835 proline-specific permease ProY 0.32 DZA65_RS04530 LysR family transcriptional regulator low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS05510 proline-specific permease ProY 0.32 HGI48_RS04610 LysR family transcriptional regulator low > 71
Rahnella sp. WP5 0.79 EX31_RS22070 proline-specific permease ProY 0.46 EX31_RS18850 LysR family transcriptional regulator low > 89
Serratia liquefaciens MT49 0.77 IAI46_04800 proline-specific permease ProY 0.38 IAI46_21020 LysR family transcriptional regulator low > 86
Dickeya dadantii 3937 0.74 DDA3937_RS05450 proline-specific permease ProY 0.32 DDA3937_RS04650 LysR family transcriptional regulator low > 74
Pseudomonas syringae pv. syringae B728a 0.60 Psyr_4834 histidine:proton symporter, AAT family 0.35 Psyr_2397 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.60 Psyr_4834 histidine:proton symporter, AAT family 0.35 Psyr_2397 transcriptional regulator, LysR family low > 86
Cupriavidus basilensis FW507-4G11 0.60 RR42_RS14635 proline-specific permease 0.36 RR42_RS01520 LysR family transcriptional regulator low > 128
Pseudomonas simiae WCS417 0.60 PS417_01755 proline-specific permease 0.42 PS417_09420 LysR family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS01810 amino acid permease 0.41 PFLU_RS10075 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.60 PFLU_RS01810 amino acid permease 0.41 PFLU_RS10075 LysR family transcriptional regulator low > 109
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS09765 amino acid permease 0.33 ABZR87_RS10340 LysR family transcriptional regulator low > 80
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_12275 histidine permease (from data) 0.28 AO353_25010 LysR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_1580 Histidine transport protein (permease) 0.34 Pf1N1B4_4411 Transcriptional regulator, LysR family — —
Pseudomonas putida KT2440 0.58 PP_5031 proline (histidine) APC transporter 0.24 PP_1615 Transcriptional regulator, LysR family low > 96
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_318 Histidine transport protein (permease) 0.42 PfGW456L13_3594 Putative transcriptional regulator LYSR-type low > 87
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS05185 amino acid permease 0.25 ABZR86_RS18110 LysR family transcriptional regulator low > 74
Pseudomonas sp. RS175 0.53 PFR28_03490 Proline-specific permease ProY 0.41 PFR28_01512 HTH-type transcriptional regulator DmlR low > 88

Not shown: 10 genomes with orthologs for GFF4300 only; 25 genomes with orthologs for GFF4227 only