Conservation of cofitness between GFF2198 and GFF3040 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

34 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2198 NADP-dependent malic enzyme (EC 1.1.1.40) 1.0 GFF3040 Biosynthetic arginine decarboxylase (EC 4.1.1.19) 0.59 15
Escherichia coli ECRC98 0.95 JDDGAC_25950 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 JDDGAC_22935 speA biosynthetic arginine decarboxylase — —
Escherichia fergusonii Becca 0.95 EFB2_01425 NADP-dependent malic enzyme 0.98 EFB2_00962 Biosynthetic arginine decarboxylase low > 86
Escherichia coli ECRC101 0.95 OKFHMN_22005 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 OKFHMN_19305 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECRC101 0.95 MCAODC_12535 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 MCAODC_09825 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECOR38 0.95 HEPCGN_21175 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 HEPCGN_18610 speA biosynthetic arginine decarboxylase low > 85
Escherichia coli ECRC102 0.95 NIAGMN_19775 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 NIAGMN_17070 speA biosynthetic arginine decarboxylase — —
Escherichia coli ECOR27 0.95 NOLOHH_13685 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 NOLOHH_11175 speA biosynthetic arginine decarboxylase low > 57
Escherichia coli Nissle 1917 0.95 ECOLIN_RS14055 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 ECOLIN_RS16350 biosynthetic arginine decarboxylase low > 52
Escherichia coli ECRC62 0.95 BNILDI_12495 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 BNILDI_09755 speA biosynthetic arginine decarboxylase — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0198 Malic enzyme 0.96 EX28DRAFT_2978 arginine decarboxylase (EC 4.1.1.19) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.95 OHPLBJKB_01268 NADP-dependent malic enzyme 0.98 OHPLBJKB_00778 Biosynthetic arginine decarboxylase low > 73
Escherichia coli BW25113 0.95 b2463 maeB malic enzyme (NCBI) 0.98 b2938 speA arginine decarboxylase (NCBI) low > 76
Escherichia coli ECRC99 0.95 KEDOAH_06215 maeB NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.98 KEDOAH_08835 speA biosynthetic arginine decarboxylase — —
Escherichia coli BL21 0.95 ECD_02354 malic enzyme: putative oxidoreductase/phosphotransacetylase 0.98 ECD_02768 biosynthetic arginine decarboxylase, PLP-binding low > 60
Enterobacter sp. TBS_079 0.94 MPMX20_03324 NADP-dependent malic enzyme 0.96 MPMX20_03799 Biosynthetic arginine decarboxylase low > 85
Klebsiella michiganensis M5al 0.94 BWI76_RS20830 bifunctional malic enzyme oxidoreductase/phosphotransacetylase 0.96 BWI76_RS24030 arginine decarboxylase low > 92
Serratia liquefaciens MT49 0.87 IAI46_18585 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.89 IAI46_21140 biosynthetic arginine decarboxylase low > 86
Pectobacterium carotovorum WPP14 0.87 HER17_RS17280 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.88 HER17_RS02665 biosynthetic arginine decarboxylase low > 75
Rahnella sp. WP5 0.87 EX31_RS20275 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.87 EX31_RS21355 biosynthetic arginine decarboxylase low > 89
Dickeya dadantii 3937 0.86 DDA3937_RS04355 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.89 DDA3937_RS18535 biosynthetic arginine decarboxylase low > 74
Dickeya dianthicola ME23 0.85 DZA65_RS04265 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.88 DZA65_RS19595 biosynthetic arginine decarboxylase low > 75
Dickeya dianthicola 67-19 0.84 HGI48_RS04345 NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase 0.88 HGI48_RS18460 biosynthetic arginine decarboxylase low > 71
Lysobacter sp. OAE881 0.60 ABIE51_RS18820 NADP-dependent malic enzyme 0.44 ABIE51_RS00125 arginine decarboxylase — —
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.1035.1 NADP-dependent malic enzyme (EC 1.1.1.40) 0.45 Xcc-8004.4909.1 Biosynthetic arginine decarboxylase (EC 4.1.1.19) — —
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS12415 NADP-dependent malic enzyme 0.42 ABZR86_RS15580 biosynthetic arginine decarboxylase — —
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_12705 pta NADP-dependent malic enzyme 0.43 OKGIIK_15625 speA biosynthetic arginine decarboxylase — —
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS11170 NADP-dependent malic enzyme 0.41 LRK54_RS09140 arginine decarboxylase — —
Rhodanobacter denitrificans MT42 0.58 LRK55_RS10875 NADP-dependent malic enzyme 0.43 LRK55_RS08900 arginine decarboxylase — —
Phocaeicola vulgatus CL09T03C04 0.47 HMPREF1058_RS02110 NADP-dependent malic enzyme 0.40 HMPREF1058_RS12110 biosynthetic arginine decarboxylase low > 67
Bacteroides stercoris CC31F 0.47 HMPREF1181_RS07830 NADP-dependent malic enzyme 0.41 HMPREF1181_RS02535 biosynthetic arginine decarboxylase low > 56
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS01295 NADP-dependent malic enzyme 0.40 ABI39_RS04690 biosynthetic arginine decarboxylase 0.42 56
Bacteroides thetaiotaomicron VPI-5482 0.46 BT1969 NADP-dependent malate dehydrogenase (NCBI ptt file) 0.42 BT3394 putative arginine decarboxylase (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.46 BACOVA_00097 phosphate acetyl/butyryl transferase 0.41 BACOVA_01911 arginine 2-monooxygenase low > 94
Parabacteroides merdae CL09T00C40 0.45 HMPREF1078_RS07665 NADP-dependent malic enzyme 0.41 HMPREF1078_RS15005 biosynthetic arginine decarboxylase low > 61

Not shown: 37 genomes with orthologs for GFF2198 only; 27 genomes with orthologs for GFF3040 only