Conservation of cofitness between GFF2850 and GFF2942 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2850 Ribosomal RNA small subunit methyltransferase F (EC 2.1.1.-) 1.0 GFF2942 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) 0.64 19
Escherichia coli ECRC99 0.82 KEDOAH_01665 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 KEDOAH_10190 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Escherichia coli ECRC102 0.82 NIAGMN_01620 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 NIAGMN_15720 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Escherichia coli ECRC100 0.82 OKFHMN_26440 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 OKFHMN_17960 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Escherichia coli ECRC98 0.82 JDDGAC_01015 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 JDDGAC_21585 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 86
Escherichia coli ECOR27 0.82 NOLOHH_16950 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 NOLOHH_09760 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Escherichia coli BL21 0.82 ECD_01806 16S rRNA m(5)C1407 methyltransferase, SAM-dependent 0.96 ECD_03063 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase — —
Escherichia coli ECRC62 0.82 BNILDI_15745 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 BNILDI_01775 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 75
Escherichia coli ECOR38 0.82 HEPCGN_04840 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 HEPCGN_16835 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 87
Escherichia coli BW25113 0.82 b1835 yebU putative nucleolar proteins (VIMSS) 0.96 b3198 kdsC 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) low > 76
Escherichia coli ECRC101 0.81 MCAODC_18965 rsmF 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 MCAODC_08480 kdsC 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_01896 Ribosomal RNA small subunit methyltransferase F 0.96 OHPLBJKB_00502 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC low > 73
Escherichia fergusonii Becca 0.81 EFB2_02166 Ribosomal RNA small subunit methyltransferase F 0.96 EFB2_00625 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC low > 86
Escherichia coli Nissle 1917 0.81 ECOLIN_RS10215 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.96 ECOLIN_RS18405 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Enterobacter asburiae PDN3 0.75 EX28DRAFT_0721 NOL1/NOP2/sun family putative RNA methylase 0.91 EX28DRAFT_3252 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_02742 Ribosomal RNA small subunit methyltransferase F 0.91 MPMX20_04104 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC low > 85
Klebsiella michiganensis M5al 0.70 BWI76_RS18000 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.82 BWI76_RS25245 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase low > 92
Pantoea sp. MT58 0.65 IAI47_08680 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.79 IAI47_17165 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 76
Serratia liquefaciens MT49 0.64 IAI46_10775 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.74 IAI46_22450 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 86
Rahnella sp. WP5 0.62 EX31_RS24855 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.76 EX31_RS12420 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 89
Pectobacterium carotovorum WPP14 0.61 HER17_RS11715 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.78 HER17_RS20040 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 75
Dickeya dadantii 3937 0.61 DDA3937_RS11990 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.75 DDA3937_RS01550 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 74
Dickeya dianthicola 67-19 0.60 HGI48_RS12080 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.75 HGI48_RS01465 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 71
Dickeya dianthicola ME23 0.60 DZA65_RS12530 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.75 DZA65_RS01530 3-deoxy-manno-octulosonate-8-phosphatase KdsC low > 75
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_07545 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF 0.62 CSW01_12795 3-deoxy-manno-octulosonate-8-phosphatase KdsC — —
Shewanella oneidensis MR-1 0.47 SO2609 NOL1/NOP2/sun family protein (NCBI ptt file) 0.50 SO3957 conserved hypothetical protein (NCBI ptt file) — —
Shewanella sp. ANA-3 0.46 Shewana3_1770 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.51 Shewana3_0676 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) — —
Shewanella loihica PV-4 0.46 Shew_1583 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.58 Shew_3307 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) — —
Shewanella amazonensis SB2B 0.44 Sama_2039 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF (RefSeq) 0.53 Sama_3084 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_0839 NOL1/NOP2/sun family putative RNA methylase 0.52 B158DRAFT_2084 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family — —
Bacteroides ovatus ATCC 8483 0.18 BACOVA_00671 NOL1/NOP2/sun family protein 0.26 BACOVA_04421 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_05610 rRNA methyltransferase 0.32 CA264_18675 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase low > 74
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS08100 rRNA cytosine-C5-methyltransferase 0.27 HMPREF1181_RS05470 HAD-IIIA family hydrolase low > 56
Bacteroides thetaiotaomicron VPI-5482 0.17 BT2042 tRNA and rRNA cytosine-C5-methylase (NCBI ptt file) 0.28 BT1677 putative hydrolase (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1153 tRNA and rRNA cytosine-C5-methylases 0.33 Echvi_2130 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family low > 79
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS16740 rRNA cytosine-C5-methyltransferase 0.33 HMPREF1078_RS00030 HAD-IIIA family hydrolase low > 61

Not shown: 1 genomes with orthologs for GFF2850 only; 47 genomes with orthologs for GFF2942 only