Conservation of cofitness between GFF3477 and GFF2038 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

35 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF3477 Aldose 1-epimerase family protein YeaD 1.0 GFF2038 LysR family transcriptional regulator YfeR 0.36 16
Klebsiella michiganensis M5al 0.86 BWI76_RS11500 D-hexose-6-phosphate mutarotase 0.85 BWI76_RS20610 LysR family transcriptional regulator low > 92
Escherichia coli BL21 0.85 ECD_01749 D-hexose-6-phosphate epimerase-like protein 0.77 ECD_02308 transcriptional regulator of yefH low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_01952 Putative glucose-6-phosphate 1-epimerase 0.77 OHPLBJKB_01315 HTH-type transcriptional regulator CynR low > 73
Escherichia coli BW25113 0.85 b1780 yeaD orf, hypothetical protein (VIMSS) 0.77 b2409 yfeR predicted DNA-binding transcriptional regulator (NCBI) low > 76
Escherichia coli ECOR27 0.85 NOLOHH_17255 yeaD Putative glucose-6-phosphate 1-epimerase 0.77 NOLOHH_13910 yfeR Uncharacterized HTH-type transcriptional regulator YfeR — —
Escherichia fergusonii Becca 0.85 EFB2_02214 Putative glucose-6-phosphate 1-epimerase 0.77 EFB2_01468 HTH-type transcriptional regulator CynR low > 86
Escherichia coli Nissle 1917 0.85 ECOLIN_RS09925 D-hexose-6-phosphate mutarotase 0.77 ECOLIN_RS13840 LysR family transcriptional regulator — —
Escherichia coli ECRC62 0.85 BNILDI_16040 yeaD Putative glucose-6-phosphate 1-epimerase 0.77 BNILDI_12775 yfeR Uncharacterized HTH-type transcriptional regulator YfeR — —
Escherichia coli ECRC101 0.84 MCAODC_18685 yeaD Putative glucose-6-phosphate 1-epimerase 0.77 MCAODC_12760 yfeR Uncharacterized HTH-type transcriptional regulator YfeR — —
Escherichia coli ECRC99 0.84 KEDOAH_01385 yeaD Putative glucose-6-phosphate 1-epimerase 0.77 KEDOAH_05990 yfeR Uncharacterized HTH-type transcriptional regulator YfeR — —
Escherichia coli ECRC98 0.84 JDDGAC_01300 yeaD Putative glucose-6-phosphate 1-epimerase 0.77 JDDGAC_26180 yfeR Uncharacterized HTH-type transcriptional regulator YfeR — —
Escherichia coli ECRC101 0.84 OKFHMN_26725 yeaD Putative glucose-6-phosphate 1-epimerase 0.77 OKFHMN_22230 yfeR Uncharacterized HTH-type transcriptional regulator YfeR — —
Escherichia coli ECOR38 0.84 HEPCGN_05115 yeaD Putative glucose-6-phosphate 1-epimerase 0.27 HEPCGN_01605 ybhD Uncharacterized HTH-type transcriptional regulator YbhD low > 85
Enterobacter sp. TBS_079 0.78 MPMX20_01843 Putative glucose-6-phosphate 1-epimerase 0.80 MPMX20_03302 HTH-type transcriptional regulator CynR low > 85
Enterobacter asburiae PDN3 0.77 EX28DRAFT_1774 Uncharacterized enzymes related to aldose 1-epimerase 0.77 EX28DRAFT_0220 Transcriptional regulator low > 76
Serratia liquefaciens MT49 0.61 IAI46_14360 D-hexose-6-phosphate mutarotase 0.62 IAI46_18415 LysR family transcriptional regulator low > 86
Dickeya dianthicola ME23 0.58 DZA65_RS10745 D-hexose-6-phosphate mutarotase 0.45 DZA65_RS00130 LysR family transcriptional regulator low > 75
Pantoea sp. MT58 0.58 IAI47_08940 D-hexose-6-phosphate mutarotase 0.58 IAI47_05470 LysR family transcriptional regulator low > 76
Dickeya dianthicola 67-19 0.58 HGI48_RS10270 D-hexose-6-phosphate mutarotase 0.45 HGI48_RS00115 LysR family transcriptional regulator low > 71
Dickeya dadantii 3937 0.57 DDA3937_RS10260 D-hexose-6-phosphate mutarotase 0.43 DDA3937_RS21150 LysR family transcriptional regulator low > 74
Rahnella sp. WP5 0.56 EX31_RS06275 D-hexose-6-phosphate mutarotase 0.64 EX31_RS20145 LysR family transcriptional regulator low > 89
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_09920 aldose epimerase 0.24 AO353_26720 LysR family transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.25 PfGW456L13_750 Aldose 1-epimerase 0.16 PfGW456L13_3348 Transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_11060 aldose epimerase 0.29 AO356_28895 LysR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_2031 Aldose 1-epimerase 0.29 Pf1N1B4_4462 LysR family transcriptional regulator YbhD low > 87
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_4078 Aldose 1-epimerase 0.21 Pf6N2E2_2110 LysR family transcriptional regulator near succinyl-CoA:3-ketoacid-coenzyme A transferase low > 103
Pseudomonas putida KT2440 0.24 PP_5332 conserved protein of unknown function 0.28 PP_2054 putative DNA-binding transcriptional regulator low > 96
Pseudomonas sp. RS175 0.24 PFR28_04492 Putative glucose-6-phosphate 1-epimerase 0.28 PFR28_01942 HTH-type transcriptional regulator CynR low > 88
Pseudomonas simiae WCS417 0.22 PS417_28100 glucose-6-phosphate 1-epimerase [EC: 5.1.3.15] (from data) 0.27 PS417_07220 LysR family transcriptional regulator low > 88
Pseudomonas syringae pv. syringae B728a 0.22 Psyr_5044 Aldose 1-epimerase 0.28 Psyr_3165 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.22 Psyr_5044 Aldose 1-epimerase 0.28 Psyr_3165 transcriptional regulator, LysR family low > 86
Pseudomonas fluorescens SBW25-INTG 0.22 PFLU_RS29785 D-hexose-6-phosphate mutarotase 0.29 PFLU_RS14945 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25 0.22 PFLU_RS29785 D-hexose-6-phosphate mutarotase 0.29 PFLU_RS14945 LysR family transcriptional regulator low > 109
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS07395 aldose 1-epimerase 0.21 HSERO_RS11120 LysR family transcriptional regulator low > 78
Alteromonas macleodii MIT1002 0.18 MIT1002_02402 Putative glucose-6-phosphate 1-epimerase 0.19 MIT1002_02002 putative hydrogen peroxide-inducible genes activator low > 70

Not shown: 10 genomes with orthologs for GFF3477 only; 23 genomes with orthologs for GFF2038 only