Conservation of cofitness between EX28DRAFT_2079 and EX28DRAFT_3231 in Enterobacter asburiae PDN3

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Enterobacter asburiae PDN3 1.0 EX28DRAFT_2079 type II secretion system protein D 1.0 EX28DRAFT_3231 putative RNA-binding protein, YhbY family 0.58 12
Enterobacter sp. TBS_079 0.87 MPMX20_01515 Putative secretin GspD 1.00 MPMX20_04084 RNA-binding protein YhbY low > 85
Rahnella sp. WP5 0.60 EX31_RS16165 type II secretion system secretin GspD 0.73 EX31_RS08590 ribosome assembly RNA-binding protein YhbY low > 89
Escherichia coli BW25113 0.54 b3325 yheF putative general protein secretion protein (VIMSS) 0.83 b3180 yhbY predicted RNA-binding protein (NCBI) low > 76
Escherichia coli Nissle 1917 0.54 ECOLIN_RS19060 type II secretion system secretin GspD 0.83 ECOLIN_RS18315 ribosome assembly RNA-binding protein YhbY low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00378 Putative type II secretion system protein D 0.83 OHPLBJKB_00520 RNA-binding protein YhbY low > 73
Escherichia fergusonii Becca 0.53 EFB2_00498 Putative secretin GspD 0.83 EFB2_00643 RNA-binding protein YhbY low > 86
Klebsiella michiganensis M5al 0.51 BWI76_RS05090 type II secretion system protein GspD 0.85 BWI76_RS25155 RNA-binding protein — —
Pectobacterium carotovorum WPP14 0.50 HER17_RS06685 type II secretion system secretin GspD 0.78 HER17_RS18325 ribosome assembly RNA-binding protein YhbY — —
Escherichia coli ECRC101 0.49 MCAODC_15265 etpD variant type II secretion system secretin EtpD 0.83 MCAODC_08570 yhbY ribosome assembly RNA-binding protein YhbY low > 87
Escherichia coli ECRC102 0.49 NIAGMN_28605 etpD variant type II secretion system secretin EtpD 0.83 NIAGMN_15810 yhbY ribosome assembly RNA-binding protein YhbY — —
Escherichia coli ECRC100 0.49 OKFHMN_00285 etpD variant type II secretion system secretin EtpD 0.83 OKFHMN_18050 yhbY ribosome assembly RNA-binding protein YhbY low > 80
Escherichia coli ECRC98 0.49 JDDGAC_30295 etpD variant type II secretion system secretin EtpD 0.83 JDDGAC_21675 yhbY ribosome assembly RNA-binding protein YhbY low > 86
Dickeya dadantii 3937 0.49 DDA3937_RS14800 type II secretion system secretin GspD 0.78 DDA3937_RS03020 ribosome assembly RNA-binding protein YhbY low > 74
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_13790 type II secretion system protein GspD 0.68 CSW01_03335 ribosome assembly RNA-binding protein YhbY — —
Alteromonas macleodii MIT1002 0.41 MIT1002_03976 Pullulanase secretion envelope PulD 0.60 MIT1002_01863 RNA-binding protein low > 70
Shewanella loihica PV-4 0.40 Shew_3619 general secretion pathway protein D (RefSeq) 0.63 Shew_2836 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.40 Shewana3_0151 general secretion pathway protein D (RefSeq) 0.64 Shewana3_1021 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.40 SO0166 gspD general secretion pathway protein D (NCBI ptt file) 0.64 SO1195 conserved hypothetical protein TIGR00253 (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.40 Sama_0169 type II and III secretion system protein (RefSeq) 0.66 Sama_0952 RNA-binding protein (RefSeq) low > 62
Escherichia coli ECOR27 0.39 NOLOHH_10975 gspD general secretion pathway protein D 0.83 NOLOHH_09850 yhbY ribosome assembly RNA-binding protein YhbY low > 75
Escherichia coli ECOR38 0.39 HEPCGN_18050 gspD general secretion pathway protein D 0.83 HEPCGN_16925 yhbY ribosome assembly RNA-binding protein YhbY low > 87
Escherichia coli BL21 0.39 ECD_02838 putative type II secretion protein GspD 0.83 ECD_03045 RNA binding protein low > 61
Erwinia tracheiphila SCR3 0.34 LU632_RS25230 gspD type II secretion system secretin GspD 0.76 LU632_RS21115 yhbY ribosome assembly RNA-binding protein YhbY low > 74
Dickeya dianthicola ME23 0.29 DZA65_RS16270 type II secretion system secretin GspD 0.78 DZA65_RS03185 ribosome assembly RNA-binding protein YhbY low > 75
Dickeya dianthicola 67-19 0.29 HGI48_RS15450 type II secretion system secretin GspD 0.78 HGI48_RS03190 ribosome assembly RNA-binding protein YhbY low > 71
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0689 general secretion pathway protein D 0.44 B158DRAFT_0633 putative RNA-binding protein, YhbY family low > 40
Pseudomonas stutzeri RCH2 0.23 Psest_2577 general secretion pathway protein D 0.33 Psest_0971 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein — —
Marinobacter adhaerens HP15 0.23 HP15_2355 type II and III secretion system protein 0.39 HP15_3075 RNA-binding, CRM domain, prokaryote low > 73
Xanthomonas campestris pv. campestris strain 8004 0.18 Xcc-8004.942.1 hypothetical protein 0.42 Xcc-8004.3126.1 FIG004454: RNA binding protein — —
Pseudomonas putida KT2440 0.16 PP_1046 Type II secretion pathway protein XcpQ 0.35 PP_4720 putative RNA binding protein low > 96

Not shown: 23 genomes with orthologs for EX28DRAFT_2079 only; 12 genomes with orthologs for EX28DRAFT_3231 only