Conservation of cofitness between ECD_03780 and ECD_03446 in Escherichia coli BL21

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03780 formate dehydrogenase formation protein 1.0 ECD_03446 selenocysteine synthase 0.54 2
Escherichia coli BW25113 0.99 b3895 fdhD formate dehydrogenase accessory protein (NCBI) 1.00 b3591 selA selenocysteine synthase (NCBI) 0.86 2
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04155 Sulfur carrier protein FdhD 1.00 OHPLBJKB_00112 L-seryl-tRNA(Sec) selenium transferase low > 73
Escherichia coli ECOR27 0.99 NOLOHH_06070 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 1.00 NOLOHH_07740 selA L-seryl-tRNA(Sec) selenium transferase 0.65 47
Escherichia coli ECOR38 0.99 HEPCGN_12585 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.99 HEPCGN_14680 selA L-seryl-tRNA(Sec) selenium transferase low > 85
Escherichia coli ECRC101 0.99 OKFHMN_13950 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 1.00 OKFHMN_15845 selA L-seryl-tRNA(Sec) selenium transferase — —
Escherichia coli ECRC99 0.99 KEDOAH_14205 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 1.00 KEDOAH_12305 selA L-seryl-tRNA(Sec) selenium transferase — —
Escherichia coli ECRC101 0.99 MCAODC_04450 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 1.00 MCAODC_06360 selA L-seryl-tRNA(Sec) selenium transferase — —
Escherichia coli ECRC102 0.99 NIAGMN_11705 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 1.00 NIAGMN_13605 selA L-seryl-tRNA(Sec) selenium transferase — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS22460 formate dehydrogenase accessory sulfurtransferase FdhD 0.99 ECOLIN_RS20515 L-seryl-tRNA(Sec) selenium transferase low > 52
Escherichia fergusonii Becca 0.99 EFB2_04720 Sulfur carrier protein FdhD 0.99 EFB2_00218 L-seryl-tRNA(Sec) selenium transferase low > 86
Escherichia coli ECRC62 0.99 BNILDI_05455 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 1.00 BNILDI_03790 selA L-seryl-tRNA(Sec) selenium transferase — —
Escherichia coli ECRC98 0.98 JDDGAC_17575 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 1.00 JDDGAC_19475 selA L-seryl-tRNA(Sec) selenium transferase — —
Klebsiella michiganensis M5al 0.83 BWI76_RS00475 sulfurtransferase FdhD 0.81 BWI76_RS27140 L-selenocysteinyl-tRNA(Sec) synthase low > 92
Enterobacter asburiae PDN3 0.78 EX28DRAFT_4379 formate dehydrogenase family accessory protein FdhD 0.73 EX28DRAFT_3845 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_04574 Sulfur carrier protein FdhD 0.72 MPMX20_00140 L-seryl-tRNA(Sec) selenium transferase 0.27 17
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF2254 Formate dehydrogenase chain D (EC 1.2.1.2) 0.85 GFF420 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) 0.46 21
Serratia liquefaciens MT49 0.71 IAI46_00205 formate dehydrogenase accessory sulfurtransferase FdhD 0.66 IAI46_00240 L-seryl-tRNA(Sec) selenium transferase 0.38 49
Shewanella sp. ANA-3 0.43 Shewana3_0108 formate dehydrogenase accessory protein (RefSeq) 0.50 Shewana3_0106 selenocysteine synthase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.43 SO0107 fdhD formate dehydrogenase accessory protein FdhD (NCBI ptt file) 0.50 SO0105 selA L-seryl-tRNA selenium transferase (NCBI ptt file) low > 76
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS03590 formate dehydrogenase accessory sulfurtransferase FdhD 0.46 ABZR86_RS04530 L-seryl-tRNA(Sec) selenium transferase low > 74
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS03240 formate dehydrogenase accessory protein FdhD 0.46 BPHYT_RS32420 selenocysteine synthase low > 109
Variovorax sp. SCN45 0.33 GFF5642 Sulfur carrier protein FdhD 0.49 GFF5654 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) — —
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS02080 formate dehydrogenase accessory sulfurtransferase FdhD 0.45 QEN71_RS18435 L-seryl-tRNA(Sec) selenium transferase low > 153
Sinorhizobium meliloti 1021 0.32 SMc03085 formate dehydrogenase accessory protein 0.49 SMa0011 selenocysteine synthase low > 103
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_11830 formate dehydrogenase family accessory protein FdhD 0.48 AO353_24985 L-seryl-tRNA(Sec) selenium transferase low > 101
Pseudomonas putida KT2440 0.31 PP_0257 protein sulfur transferase 0.47 PP_0493 selenocysteine synthase low > 96
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_1673 Formate dehydrogenase chain D (EC 1.2.1.2) 0.46 Pf1N1B4_4952 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) low > 87
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_408 Formate dehydrogenase chain D (EC 1.2.1.2) 0.45 PfGW456L13_3095 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) low > 87
Pseudomonas stutzeri RCH2 0.28 Psest_3964 formate dehydrogenase family accessory protein FdhD 0.48 Psest_4108 seryl-tRNA(sec) selenium transferase low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.12 DVU0578 formate dehydrogenase accessory protein FdhD, putative (TIGR) 0.38 DVU2883 selA L-seryl-tRNA selenium transferase (TIGR) — —

Not shown: 43 genomes with orthologs for ECD_03780 only; 1 genomes with orthologs for ECD_03446 only