Conservation of cofitness between ECD_03780 and ECD_03445 in Escherichia coli BL21

30 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BL21 1.0 ECD_03780 formate dehydrogenase formation protein 1.0 ECD_03445 selenocysteinyl-tRNA-specific translation factor 0.55 1
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04155 Sulfur carrier protein FdhD 0.99 OHPLBJKB_00113 Selenocysteine-specific elongation factor low > 73
Escherichia coli BW25113 0.99 b3895 fdhD formate dehydrogenase accessory protein (NCBI) 0.99 b3590 selB selenocysteinyl-tRNA-specific translation factor (NCBI) 0.86 1
Escherichia coli ECOR38 0.99 HEPCGN_12585 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.99 HEPCGN_14685 selB selenocysteine-specific translation elongation factor low > 85
Escherichia coli ECRC99 0.99 KEDOAH_14205 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.98 KEDOAH_12300 selB selenocysteine-specific translation elongation factor — —
Escherichia coli ECRC101 0.99 OKFHMN_13950 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.98 OKFHMN_15850 selB selenocysteine-specific translation elongation factor — —
Escherichia coli ECRC101 0.99 MCAODC_04450 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.98 MCAODC_06365 selB selenocysteine-specific translation elongation factor — —
Escherichia coli ECOR27 0.99 NOLOHH_06070 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.99 NOLOHH_07745 selB selenocysteine-specific translation elongation factor low > 57
Escherichia coli ECRC102 0.99 NIAGMN_11705 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.98 NIAGMN_13610 selB selenocysteine-specific translation elongation factor — —
Escherichia fergusonii Becca 0.99 EFB2_04720 Sulfur carrier protein FdhD 0.99 EFB2_00219 Selenocysteine-specific elongation factor low > 86
Escherichia coli Nissle 1917 0.99 ECOLIN_RS22460 formate dehydrogenase accessory sulfurtransferase FdhD 0.99 ECOLIN_RS20510 selenocysteine-specific translation elongation factor low > 52
Escherichia coli ECRC62 0.99 BNILDI_05455 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.99 BNILDI_03785 selB selenocysteine-specific translation elongation factor — —
Escherichia coli ECRC98 0.98 JDDGAC_17575 fdhD formate dehydrogenase accessory sulfurtransferase FdhD 0.98 JDDGAC_19480 selB selenocysteine-specific translation elongation factor — —
Klebsiella michiganensis M5al 0.83 BWI76_RS00475 sulfurtransferase FdhD 0.78 BWI76_RS27135 selenocysteine-specific translation factor low > 92
Enterobacter asburiae PDN3 0.78 EX28DRAFT_4379 formate dehydrogenase family accessory protein FdhD 0.86 EX28DRAFT_3844 selenocysteine-specific elongation factor SelB low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_04574 Sulfur carrier protein FdhD 0.85 MPMX20_00141 Selenocysteine-specific elongation factor 0.33 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF2254 Formate dehydrogenase chain D (EC 1.2.1.2) 0.85 GFF421 Selenocysteine-specific translation elongation factor 0.52 10
Serratia liquefaciens MT49 0.71 IAI46_00205 formate dehydrogenase accessory sulfurtransferase FdhD 0.64 IAI46_00245 selenocysteine-specific translation elongation factor 0.41 34
Shewanella sp. ANA-3 0.43 Shewana3_0108 formate dehydrogenase accessory protein (RefSeq) 0.39 Shewana3_0107 selenocysteine-specific translation elongation factor SelB (RefSeq) low > 73
Shewanella oneidensis MR-1 0.43 SO0107 fdhD formate dehydrogenase accessory protein FdhD (NCBI ptt file) 0.39 SO0106 selB selenocysteine-specific translation elongation factor (NCBI ptt file) low > 76
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS03590 formate dehydrogenase accessory sulfurtransferase FdhD 0.30 ABZR86_RS04535 selenocysteine-specific translation elongation factor low > 74
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS03240 formate dehydrogenase accessory protein FdhD 0.33 BPHYT_RS32415 translation elongation factor low > 109
Variovorax sp. SCN45 0.33 GFF5642 Sulfur carrier protein FdhD 0.32 GFF5650 Selenocysteine-specific translation elongation factor — —
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS02080 formate dehydrogenase accessory sulfurtransferase FdhD 0.34 QEN71_RS18440 selenocysteine-specific translation elongation factor low > 153
Sinorhizobium meliloti 1021 0.32 SMc03085 formate dehydrogenase accessory protein 0.31 SMa0015 selenocysteine-specific elongation factor low > 103
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_11830 formate dehydrogenase family accessory protein FdhD 0.38 AO353_24990 translation elongation factor low > 101
Pseudomonas putida KT2440 0.31 PP_0257 protein sulfur transferase 0.35 PP_0494 selenocysteyl-tRNA-specific translation elongation factor low > 96
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_1673 Formate dehydrogenase chain D (EC 1.2.1.2) 0.38 Pf1N1B4_4953 Selenocysteine-specific translation elongation factor low > 87
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_408 Formate dehydrogenase chain D (EC 1.2.1.2) 0.36 PfGW456L13_3096 Selenocysteine-specific translation elongation factor low > 87
Pseudomonas stutzeri RCH2 0.28 Psest_3964 formate dehydrogenase family accessory protein FdhD 0.36 Psest_4109 selenocysteine-specific elongation factor SelB low > 67
Desulfovibrio vulgaris Hildenborough JW710 0.12 DVU0578 formate dehydrogenase accessory protein FdhD, putative (TIGR) 0.21 DVU0500 selB selenocysteine-specific translation elongation factor (TIGR) — —

Not shown: 43 genomes with orthologs for ECD_03780 only; 1 genomes with orthologs for ECD_03445 only